Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1060
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.065
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 29   1.8  
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           27   5.6  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 33.5 bits (73), Expect = 0.065
 Identities = 17/46 (36%), Positives = 19/46 (41%)
 Frame = +2

Query: 257 EFVXIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVXGTYEPNDDEC 394
           E   +E KFY EVHA               R  I  G  EP D+EC
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEEC 186


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 210 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 112
           V +PS +HE D   PL F +GS +  T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 215 ECSSANPRLENSSEEFVXIEAKFYSEVH 298
           E  +A+   E+SSEE +  + KFY +VH
Sbjct: 34  ETDTASEGEEDSSEEIMFCDKKFYWQVH 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,691,629
Number of Sequences: 59808
Number of extensions: 185637
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)