Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1060
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   9.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 308 IRVHVLHCKTWPQXRQTPLKSSQGADSPTNIRG*GCH 198
           ++ HVL   T P+ + TP   ++      NIR   CH
Sbjct: 391 VQTHVLTIHTIPEVKVTPRFQAKRLKEEANIR---CH 424


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 218 CSSANPRLENSSEEFVXIEAKFYSEV 295
           CS++NP  E S+E  + + A  + EV
Sbjct: 310 CSASNPGGEASAEIRLIVTAPLHVEV 335


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 218 CSSANPRLENSSEEFVXIEAKFYSEV 295
           CS++NP  E S+E  + + A  + EV
Sbjct: 310 CSASNPGGEASAEIRLIVTAPLHVEV 335


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 186 HAEAMASLPP 215
           HA++ ASLPP
Sbjct: 291 HAKSQASLPP 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,647
Number of Sequences: 438
Number of extensions: 1351
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)