Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1059
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54C31 Cluster: Putative extracellular matrix protein; ...    32   6.6  
UniRef50_P89134 Cluster: ORF2a; n=1; Simian hemorrhagic fever vi...    31   8.8  

>UniRef50_Q54C31 Cluster: Putative extracellular matrix protein;
           n=2; Dictyostelium discoideum AX4|Rep: Putative
           extracellular matrix protein - Dictyostelium discoideum
           AX4
          Length = 996

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 19/62 (30%), Positives = 23/62 (37%)
 Frame = +1

Query: 97  APSSICLYFTTIMCTPCGPMVCYKYEDCGPPLQCLPRSAFKRNGLQDCQFFQQVRFATCA 276
           +PS  CLY     C  CG   C   + C  PL C P         + C  F    F +C 
Sbjct: 524 SPSGACLYEPIANCVNCGGNQCITTDFC-LPLICGPDGVTCAVEPKKCDDFNPCTFDSCI 582

Query: 277 VP 282
            P
Sbjct: 583 SP 584


>UniRef50_P89134 Cluster: ORF2a; n=1; Simian hemorrhagic fever
           virus|Rep: ORF2a - Simian hemorrhagic fever virus (SHFV)
          Length = 204

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 171 IFVTYHRAAWSTHDCSKIQANGGG 100
           I +TY R + STH+C+ I+A+ GG
Sbjct: 67  IILTYGRLSASTHECTSIRASSGG 90


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,390,926
Number of Sequences: 1657284
Number of extensions: 7993637
Number of successful extensions: 15862
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15848
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)