Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1059
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17705.1 68415.m02051 expressed protein                             29   1.9  
At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS) id...    27   7.7  

>At2g17705.1 68415.m02051 expressed protein
          Length = 135

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 124 TTIMCTPCGPMVCYKYEDCGPPL 192
           T I CT C  ++ Y Y+D GPPL
Sbjct: 72  TKIKCTSCNHLIGYIYDD-GPPL 93


>At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS)
           identical to solanesyl diphosphate synthase [Arabidopsis
           thaliana] GI:19911233; contains Pfam profile PF00348:
           Polyprenyl synthetase
          Length = 406

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 166 KYEDCGPPLQCLPRSAFKRNGLQDCQFFQQVR 261
           K +D    LQCLPRS F R+ L+D   +   R
Sbjct: 374 KADDAIKNLQCLPRSGF-RSALEDMVLYNLER 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,350,188
Number of Sequences: 28952
Number of extensions: 178002
Number of successful extensions: 372
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)