Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1007
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    25   0.54 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   0.94 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.2  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
 Frame = +3

Query: 438 AMKQRKVFMIKGG-----GFPAIRRAMLDEA 515
           A K R++F IK       G+PA RR+++D+A
Sbjct: 7   AQKNREMFAIKKSYSIENGYPARRRSLVDDA 37


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 291 KKDLRPSSAISFSKSDHGPETTSSTEQLR 377
           K+       + +S   HGP++ S  +QLR
Sbjct: 10  KRGRSTGRGLKYSGQQHGPQSDSRNQQLR 38


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 289 AVLSLWSLEXDTFPLIPSLQPWI 221
           A +++W+   DT P+   + PWI
Sbjct: 527 AEVNIWNPLTDTIPIHVWIHPWI 549


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,680
Number of Sequences: 336
Number of extensions: 2749
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)