Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1007
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   1.8  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   2.3  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   7.1  
SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   9.4  
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    25   9.4  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    25   9.4  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   9.4  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   9.4  

>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 349 SGP*SDLENEIALEGLKSFLAVLSLWS 269
           +GP +D  +E++LEG+    A+ S WS
Sbjct: 35  AGPINDRTSELSLEGVSKAEAIASTWS 61


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 554 PTNVDPKKASGQGTLQSRKN*YSTSSWXHHS 646
           P N+ P + +    + S ++ Y +  W HHS
Sbjct: 172 PNNIHPPEVAPMIAIPSSRSNYDSPGWAHHS 202


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -3

Query: 628 TCRVSILSTLESXLPRRFFRIYVCWRMTYL-MGXIFFYPASSSMARRIAGKPPPLIMKTL 452
           +C+    S + S L      +   W++  + +  I +   S+S++ RI  +   L +K +
Sbjct: 636 SCKCVYASLVASELEHEILEVLRRWQLLGIGIADIIYDSVSASISARIK-RQNSLNLKPV 694

Query: 451 RCFIAVSAIFFNS 413
           R  I+V A FF S
Sbjct: 695 RFRISVLAEFFGS 707


>SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 633 QELVEYQFFLLWRVPCPDAFLGSTF 559
           +E   Y FFLL+ V  P  FLG  F
Sbjct: 75  EEYRRYYFFLLFYVSFPHIFLGLFF 99


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 595 SXLPRRFFRIYVCWRMTYLMGXI 527
           S L  RFF+I   +R++YLMG +
Sbjct: 310 SNLYTRFFKIASSFRVSYLMGCL 332


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 257 YLSSNSIITAMDLVLPSR 204
           +L SN +I + DLVLP R
Sbjct: 646 HLKSNLVINSQDLVLPKR 663


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 562 RRS*KSVWARXSPK*KELI 618
           RR   SVW R SPK K+L+
Sbjct: 261 RRQLDSVWHRVSPKTKQLV 279


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 463 MKTLRCFIAVSAIFFNSFHLSLLTQ 389
           +  L+ F  +S+   N F LSLLTQ
Sbjct: 623 LTNLQSFCTISSFLSNDFPLSLLTQ 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,735
Number of Sequences: 5004
Number of extensions: 45901
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)