Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1007
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    32   0.46 
SB_28534| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_42633| Best HMM Match : DUF26 (HMM E-Value=3.3)                     29   3.3  
SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)                  29   3.3  
SB_18803| Best HMM Match : KE2 (HMM E-Value=1.5)                       28   7.5  

>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 285  TAKKDLRPSSAISFSKSDHGPETTSSTEQLRQYKSWVSNERWNELKKIAETAMKQR 452
            T K++++   A +  K+D   E T   +++RQ K  ++NE  N  +K A+   + R
Sbjct: 3689 TLKREMKSLKADASRKNDKTAELTHENDKIRQEKDDIANELMNLKEKFAKVEEEYR 3744


>SB_28534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 222 IHGCNDGIRGKVSXSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQYKSWVSN 401
           +H  +  IRG +  SKL   +T  K     ++++  ++ H P   S   Q RQ +S  SN
Sbjct: 7   LHNSDRSIRGPLPRSKLGTPATTTKPPFKRTSVTRDRTSHVPNGLSHVTQSRQ-RSPASN 65

Query: 402 E 404
           +
Sbjct: 66  K 66


>SB_42633| Best HMM Match : DUF26 (HMM E-Value=3.3)
          Length = 414

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 294 KDLRPSSAISFSKSDHGPETTSSTEQLRQYKSWVSNERWNE 416
           +D+ P SA SF   D+G   ++S E+ R        ERW+E
Sbjct: 345 RDISPMSAASFV-DDNGKAGSASPERERDSTGLAPKERWSE 384


>SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)
          Length = 323

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 360 STEQLRQYKSWVSNERWNELKKIAETAMKQRKVFMIKGGG 479
           +T   R  ++W +   + E  K AE  +  +  F+++GGG
Sbjct: 270 TTRSGRTCRTWKARALYKEQSKFAEPKLLDKAFFLVRGGG 309


>SB_18803| Best HMM Match : KE2 (HMM E-Value=1.5)
          Length = 244

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 267 KLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQ 380
           K  KES ++   +PSS  S S+    P T +S EQ R+
Sbjct: 109 KFEKESKSEDIKQPSSFSSISERPPTPPTDTSEEQTRE 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,823,932
Number of Sequences: 59808
Number of extensions: 311834
Number of successful extensions: 674
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)