Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1007
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden...    31   0.93 
Z68882-14|CAA93109.1|  366|Caenorhabditis elegans Hypothetical p...    29   3.8  
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei...    29   3.8  
Z70309-8|CAE17922.1|  196|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence of
            males (increasedx chromosome loss) protein 1, isoform a
            protein.
          Length = 1281

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +3

Query: 237  DGIRG-KVSXSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQYKSWVSNE--- 404
            DG R  +V   K+ +     KD++     + +      E+    +++ + K  +S++   
Sbjct: 844  DGNRKVEVEKEKVSQIDRQYKDMKKKEKTAAAALKEHTESMEQDKEVLEEKKALSHKLET 903

Query: 405  RWNELKKIAETAMK 446
             WNE+KKIA+ AMK
Sbjct: 904  EWNEVKKIAQVAMK 917


>Z68882-14|CAA93109.1|  366|Caenorhabditis elegans Hypothetical
           protein C47E12.11 protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +3

Query: 258 SXSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQYKSWVSNERWNELKKIAET 437
           S SK + +S+ KK+ +  S  + SKS     T S + QLR   S   +E W++ K   + 
Sbjct: 299 SHSK-NSKSSKKKNTQTDSKSTKSKSLSMKTTYSESSQLRDSDSCSEDESWDKQKSKKDV 357

Query: 438 AMKQ 449
             K+
Sbjct: 358 KKKK 361


>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
            protein.
          Length = 1198

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 366  EQLRQYKSWVSNERWNELKKIAETAMK 446
            E+ R+Y  W++ E+ NELK++     K
Sbjct: 1057 EKARKYLDWINEEQLNELKRLKSEGKK 1083


>Z70309-8|CAE17922.1|  196|Caenorhabditis elegans Hypothetical
           protein R102.9 protein.
          Length = 196

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 407 VE*IEKDRGNSDETT*GFHD*RRRFPSNTSSHA*RGWVEKYXSHKVR 547
           VE + KD GNS+ ++         FPS++S+    GW EK+ S  +R
Sbjct: 130 VEIVTKDCGNSESSSMDLKSVPSLFPSSSSTVIIIGW-EKFMSSVIR 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,737,092
Number of Sequences: 27780
Number of extensions: 245897
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)