Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1007
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.63 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.8  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
 Frame = +3

Query: 438 AMKQRKVFMIKGG-----GFPAIRRAMLDEA 515
           A K R++F IK       G+PA RR+++D+A
Sbjct: 7   AQKNREMFAIKKSYSIENGYPARRRSLVDDA 37


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = -3

Query: 331 LENEIALEGLKSFLAVLSLWSLEXDTFPLIPSLQPWISFYLHVSETFV 188
           LEN + +  L      +  W+   DT P+   + PW+    +  +T +
Sbjct: 511 LENILDMLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLI 558


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 255 VSXSKLHKESTAKKDLRPSS 314
           ++  + H  + +K+DL PSS
Sbjct: 404 LTPKRFHSRAASKEDLSPSS 423


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 255 VSXSKLHKESTAKKDLRPSS 314
           ++  + H  + +K+DL PSS
Sbjct: 404 LTPKRFHSRAASKEDLSPSS 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,147
Number of Sequences: 438
Number of extensions: 2977
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)