Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1007
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2 (PL...    29   2.7  
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL...    29   3.5  
At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containi...    28   6.1  

>At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2
           (PLDBETA2) / PLDdelta1 identical to SP|O23078
           Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD
           beta 2) (PLDdelta1) [Arabidopsis thaliana]; contains
           Pfam profiles: PF00614 phospholipase D.active site
           motif, PF00168 C2 domain
          Length = 927

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 545 VPYGXXIFLPSLVKHGSTYCWETAAFNHENLTLFHRCFRDLF 420
           VP+G    L  L+ HG+   W + A N  NL LFH+    +F
Sbjct: 103 VPFGKAS-LKVLLLHGNLDIWVSCANNLPNLDLFHKTLGVVF 143


>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
           (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
           (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
           {Arabidopsis thaliana}; contains Pfam profiles: PF00614
           phospholipase D.active site motif, PF00168 C2 domain
          Length = 1083

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 521 LPSLVKHGSTYCWETAAFNHENLTLFHRCFRDLFQFIP 408
           L  L+ HG+   W   A N  N+ +FH+   D+F  +P
Sbjct: 266 LKVLLLHGNLDIWIYHAKNLPNMDMFHKTLGDMFGRLP 303


>At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 630

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 348 ETTSSTEQLRQYKSWVSNERWNELKKIAE 434
           ET      L  +  W +++RW+++K++ E
Sbjct: 110 ETLDMNSLLNMFADWTASQRWSDMKQLFE 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,088,459
Number of Sequences: 28952
Number of extensions: 232653
Number of successful extensions: 558
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)