Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1006
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 128 8e-31
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 82 9e-17
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 75 7e-15
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 74 2e-14
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 33 0.039
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 28 1.5
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 27 2.0
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.4
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 26 6.0
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 6.0
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 128 bits (309), Expect = 8e-31
Identities = 54/71 (76%), Positives = 61/71 (85%)
Frame = +1
Query: 46 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 225
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 226 PRAILVDLEPG 258
PRA+LVDLEPG
Sbjct: 61 PRAVLVDLEPG 71
Score = 118 bits (283), Expect = 1e-27
Identities = 50/64 (78%), Positives = 57/64 (89%)
Frame = +3
Query: 255 GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCL 434
GTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVVR+EAE CD L
Sbjct: 71 GTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDAL 130
Query: 435 QGFQ 446
QGFQ
Sbjct: 131 QGFQ 134
Score = 103 bits (246), Expect = 3e-23
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = +2
Query: 509 REEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSVHQLVENTDESYCIDNEALYDICFRTL 688
REEYPDR+M TFS+ P+PK SDTVVEPYNATLS+HQLVEN+DE++CIDNEAL I TL
Sbjct: 156 REEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTL 215
Query: 689 KL 694
K+
Sbjct: 216 KI 217
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 81.8 bits (193), Expect = 9e-17
Identities = 34/69 (49%), Positives = 51/69 (73%)
Frame = +1
Query: 49 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 228
REI+ +QAGQCGNQIG++FW+ + EHGI P GT + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 229 RAILVDLEP 255
RAIL+DLEP
Sbjct: 63 RAILIDLEP 71
Score = 54.4 bits (125), Expect = 1e-08
Identities = 21/63 (33%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +3
Query: 261 MDSVRSGPFGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCL 434
++++ S +G ++ P+N + ++G AGNNWA G Y+ + + ++D++ +EA+G D L
Sbjct: 74 VNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSL 132
Query: 435 QGF 443
+GF
Sbjct: 133 EGF 135
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +2
Query: 512 EEYPDRIMNTFSIVP-SPKVSDTVVEPYNATLSVHQLVENTDESYCIDNEALYDI 673
+ YP +I+ T+S+ P S VSD VV+PYN+ L++ +L N D +DN AL I
Sbjct: 159 DRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHI 213
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 75.4 bits (177), Expect = 7e-15
Identities = 30/61 (49%), Positives = 44/61 (72%)
Frame = +3
Query: 261 MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQG 440
+D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++DSVL+ +R+ A+ C LQG
Sbjct: 79 IDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQG 138
Query: 441 F 443
F
Sbjct: 139 F 139
Score = 66.5 bits (155), Expect = 3e-12
Identities = 28/60 (46%), Positives = 42/60 (70%)
Frame = +2
Query: 515 EYPDRIMNTFSIVPSPKVSDTVVEPYNATLSVHQLVENTDESYCIDNEALYDICFRTLKL 694
EY + FS+ P+P+VS +VVEPYN+ L+ H ++N+D ++ +DNEA YDIC R L +
Sbjct: 164 EYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDI 223
Score = 60.1 bits (139), Expect = 3e-10
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Frame = +1
Query: 46 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG------TYHGDSDLQLERINVYYNEA 207
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 208 TGGKYVPRAILVDLEP 255
GK+VPR+I VDLEP
Sbjct: 61 GQGKFVPRSIYVDLEP 76
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 74.1 bits (174), Expect = 2e-14
Identities = 30/61 (49%), Positives = 42/61 (68%)
Frame = +3
Query: 261 MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQG 440
+D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D +R+ A+ C LQG
Sbjct: 75 IDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQG 134
Query: 441 F 443
F
Sbjct: 135 F 135
Score = 66.1 bits (154), Expect = 5e-12
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +1
Query: 46 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLE--RINVYYNEATGGK 219
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 220 YVPRAILVDLEP 255
YVPR+I VDLEP
Sbjct: 61 YVPRSIYVDLEP 72
Score = 62.1 bits (144), Expect = 7e-11
Identities = 26/60 (43%), Positives = 40/60 (66%)
Frame = +2
Query: 515 EYPDRIMNTFSIVPSPKVSDTVVEPYNATLSVHQLVENTDESYCIDNEALYDICFRTLKL 694
EY + FS+ P+P+VS +VVEPYN+ L+ H ++ D ++ +DNE+ YDIC R L +
Sbjct: 160 EYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDI 219
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 33.1 bits (72), Expect = 0.039
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 98 LSSGKLYPMSMASIRRERITETPTSSWSASTCTITRRPEES 220
L GKL P+ A +++ ++ TS++S +T +T+ EES
Sbjct: 401 LEGGKLLPLPTAPVQQSKVQINGTSAYSTATDAVTKDAEES 441
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = -2
Query: 691 LQRSEADVVQSLVVNAVRFICIFHQLMYGEGCVIRLNYGVRHFR 560
LQ +++L+ A+ +C + + ++ E C ++N+ + HF+
Sbjct: 9 LQTKSDFTLKNLIFFAISTLC-YKRALFNENCYKKVNFEIEHFK 51
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 375 PRLRCSDP*PSCCQHPIAQRQSC 307
PR +C D PSCC + +SC
Sbjct: 481 PRTQCVDTPPSCCGGHCCKEESC 503
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 279 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 380
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 85 NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERI 186
N++G EV++++ +DPT + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 348 AKGHYTEGAELVDSVLDVVRKEAEGCDCLQ 437
A+GH G ELV + D +RK++E L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,520
Number of Sequences: 5004
Number of extensions: 63716
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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