Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1004
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 45 5e-05
07_01_1036 + 9021395-9021658,9024214-9024690 37 0.016
08_02_1310 - 26037025-26038074 33 0.15
08_02_1251 - 25592537-25593380,25593589-25593893 33 0.20
06_01_1008 - 7853089-7854147 33 0.20
08_01_0797 + 7711772-7712869 31 0.79
08_01_0027 - 195321-195932,197206-197415 31 0.79
08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546 31 1.0
08_02_1304 - 26008105-26009070 30 1.4
08_01_0801 - 7750548-7751708 29 3.2
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 28 5.6
08_01_0199 + 1628158-1629192 28 7.4
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 45.2 bits (102), Expect = 5e-05
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 257 HKLVLSVCSPXFQEMFX--MNPTQHPXVFLKDVSHSALRDLLQFMYXGEVNVKXEELASF 430
HKL+LS+ S F +MF M + VF +DV A L+QFMY GE+ V EE+
Sbjct: 366 HKLILSLWSMTFDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYSGELKVDIEEITPV 425
Query: 431 ISTAXQLQVK-GLTGNQNE 484
+ L + G+T Q E
Sbjct: 426 LVELLLLSDQFGITALQFE 444
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +2
Query: 248 IATHKLVLSVCSPXFQEMFX--MNPTQHPXVFLKDVSHSALRDLLQFMYXGEVNVKXEEL 421
+ H+++L+ SP F+ M M ++ + + DVS+ LR + +MY E + +
Sbjct: 81 VPAHRVILASRSPVFRAMLENEMEESRSGIIKIYDVSYDVLRAFVHYMYTAEALLDEQMA 140
Query: 422 ASFISTAXQLQVKGL 466
+ + A + +VK L
Sbjct: 141 SDLLVLAEKYEVKNL 155
>08_02_1310 - 26037025-26038074
Length = 349
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 257 HKLVLSVCSPXFQEMFX--MNPTQHPXVFLKDVSHSALRDLLQFMYXGEVNVKXEELASF 430
H+ VL+ SP F+ M P V L+D+ +A R +L F+Y + +ELA F
Sbjct: 193 HRAVLAARSPVFKAALFGSMAEATAPSVALRDMDPAAFRAVLHFIYTDALPDDIDELAGF 252
>08_02_1251 - 25592537-25593380,25593589-25593893
Length = 382
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 257 HKLVLSVCSPXFQEMFXMNPTQHP--XVFLKDVSHSALRDLLQFMYXGE 397
H+ +L+VCSP F+ + + + + L D+ + LL FMY G+
Sbjct: 238 HRALLAVCSPVFKALLLSSTAEAAACSITLNDIKPAMFEALLHFMYTGD 286
>06_01_1008 - 7853089-7854147
Length = 352
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 245 FIATHKLVLSVCSPXFQEMFX--MNPTQHPXVFLKDVSHSALRDLLQFMYXG 394
F+A HK++L+ SP F F M + V +KD+ S + +L F+Y G
Sbjct: 188 FLA-HKIILAARSPVFMAEFFGPMKESSSQCVEIKDIEASVFKAMLHFIYTG 238
>08_01_0797 + 7711772-7712869
Length = 365
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 251 ATHKLVLSVCSPXFQEMFXMNPTQHP--XVFLKDVSHSALRDLLQFMY 388
A HKLVL+ SP F+ F + + +KD+ S R LL F+Y
Sbjct: 204 AAHKLVLAARSPVFKAEFYGEMIERGTFSIDIKDMQPSVFRALLHFIY 251
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 242 GFIATHKLVLSVCSPXFQEMF--XMNPTQHPXVFLKDVSHSALRDLLQFMY 388
G + HK +L+ CSP F+ MF + + + + D+ + L+ F+Y
Sbjct: 117 GVLKAHKAILASCSPVFESMFLHDLKEKESSTININDMCLESCSALIGFIY 167
>08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546
Length = 290
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 251 ATHKLVLSVCSPXFQ-EMF-XMNPTQHPXVFLKDVSHSALRDLLQFMYXGEVNV 406
A HK+VL++ SP F+ E+F M + +KD+ + LL F+Y +++
Sbjct: 131 AAHKVVLAMRSPVFKAELFGPMREAGAQVLPIKDIQPDVFKALLHFIYTDSLSI 184
>08_02_1304 - 26008105-26009070
Length = 321
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 257 HKLVLSVCSPXFQE--MFXMNPTQHPXVFLKDVSHSALRDLLQFMYXGEVNVKXEELASF 430
H+ VL+ SP F+ + M P V L+D+ + R LL F+Y + + E +S
Sbjct: 168 HRAVLAARSPVFRAELLGSMAEATMPCVTLRDIEPATFRALLHFVYTDVLQI---EGSSS 224
Query: 431 ISTAXQLQ 454
ST LQ
Sbjct: 225 TSTTDLLQ 232
>08_01_0801 - 7750548-7751708
Length = 386
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 251 ATHKLVLSVCSPXFQ-EMFXM--NPTQHPXVFLKDVSHSALRDLLQFMYXGEVNV 406
+ HKLVL++ SP F+ E+ + P P + + D+ + R LLQF+Y + V
Sbjct: 213 SVHKLVLAMRSPVFKAELCGLLREPGTQP-ITIVDMQPAVFRALLQFIYTDQFPV 266
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 296 EMFXMNPTQHPXVFLKDVSHSALRDLLQFMYXGEVNVKXEELASFISTAXQLQVKGLTGN 475
+MF ++P++ P F + S S +RD Q+ + N++ + + Q + LTG
Sbjct: 1073 DMFLVDPSESPQDFAANTSSSGVRDDRQWCVLEQANLQGYD----SDQPRRRQARRLTGL 1128
Query: 476 QNEESSTPSKPSRLRG-QAPGRHNKXN 553
P + R G + P RH+K N
Sbjct: 1129 PRR----PRRRGRRWGAKMPQRHSKNN 1151
>08_01_0199 + 1628158-1629192
Length = 344
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 251 ATHKLVLSVCSPXFQEMFXMNPTQH--PXVFLKDVSHSALRDLLQFMY 388
A H++VL++ SP F + +H P + + D+ LL+F+Y
Sbjct: 211 AAHRIVLAMRSPVFMASLYGSMREHRAPRIAVDDMEPEVFDALLRFVY 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,754,602
Number of Sequences: 37544
Number of extensions: 263613
Number of successful extensions: 685
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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