Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1003
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    42   3e-04
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS...    41   7e-04
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS...    37   0.011
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    37   0.015
At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein (H...    35   0.045
At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS...    34   0.079
At2g27980.1 68415.m03391 expressed protein                             30   1.7  
At1g78910.1 68414.m09199 pseudouridine synthase family protein l...    29   3.0  
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote...    29   3.9  
At3g22410.1 68416.m02827 expressed protein                             27   9.0  
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi...    27   9.0  
At1g34180.1 68414.m04239 no apical meristem (NAM) family protein...    27   9.0  

>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
 Frame = +3

Query: 297 DVQHFAPEEISVKTADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPEGCTAE 452
           D+     EE+ V+  DG I+ + G+    +EEK D+   + R   +FTRR+ LPE    E
Sbjct: 66  DLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKME 125

Query: 453 SVESRLSSDGVLSVIAPR 506
            +++ +  +GVLSV  P+
Sbjct: 126 EIKASM-ENGVLSVTVPK 142


>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
           (HSP17.4-CI) identical to 17.4 kDa class I heat shock
           protein SP:P19036 from [Arabidopsis thaliana]
          Length = 156

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
 Frame = +3

Query: 297 DVQHFAPEEISVKTADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPEGCTAE 452
           DV     EE+ V+  DG I+ + G+    +EEK D    + R   +F RR+ LPE    E
Sbjct: 65  DVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVE 124

Query: 453 SVESRLSSDGVLSVIAPR 506
            V++ +  +GVLSV  P+
Sbjct: 125 EVKASM-ENGVLSVTVPK 141


>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
           (HSP18.1-CI) identical to 18.2 kDa class I heat shock
           protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
           contains Pfam profile: PF00011 Hsp20/alpha crystallin
           family
          Length = 161

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
 Frame = +3

Query: 297 DVQHFAPEEISVKTADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPEGCTAE 452
           D+     EE+ V+  D  ++ + G+    +EEK D+   + R   +F RR+ LPE    E
Sbjct: 68  DLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKME 127

Query: 453 SVESRLSSDGVLSVIAPR 506
            V++ +  +GVL+V+ P+
Sbjct: 128 EVKATM-ENGVLTVVVPK 144


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
 Frame = +3

Query: 297 DVQHFAPEEISVKTA-DGYIVVEG-KHEEKKDQHGYISR------QFTRRYALPEGCTAE 452
           D+     EE+ V+   D  + + G +H EK+D++    R      QFTRR+ LPE    +
Sbjct: 62  DLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMD 121

Query: 453 SVESRLSSDGVLSVIAPR 506
            V++ +  +GVL+V  P+
Sbjct: 122 QVKAAM-ENGVLTVTVPK 138


>At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein
           (HSP22.0-ER) identical to endomembrane-localized small
           heat shock protein GI:511795 from [Arabidopsis thaliana]
          Length = 195

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
 Frame = +3

Query: 264 KSDKDKFQVNLDVQHFAPEEISVKTAD-GYIVVEG---KHEEKK-DQHGYISR---QFTR 419
           K   +  ++ LD+     +E+ ++  + G + V G   + EEKK DQ   + R   +F R
Sbjct: 76  KETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWR 135

Query: 420 RYALPEGCTAESVESRLSSDGVLSV 494
           ++ LP+    ESV+++L  +GVL++
Sbjct: 136 QFKLPDNVDMESVKAKL-ENGVLTI 159


>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
           (HSP17.8-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]; contains Pfam
           PF00011: Hsp20/alpha crystallin family
          Length = 157

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
 Frame = +3

Query: 297 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 452
           D+     EE+ V+  D  ++ + G+     EEK+D    + R   QF+R++ LPE    +
Sbjct: 64  DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMD 123

Query: 453 SVESRLSSDGVLSVIAPR 506
            V++ +  +GVL+V  P+
Sbjct: 124 QVKASM-ENGVLTVTVPK 140


>At2g27980.1 68415.m03391 expressed protein
          Length = 1037

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 222 ASPCCRGSRPWSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEG 365
           A PC R +R  S +K +  K +VN D  H  PE+ ++ + D  + V G
Sbjct: 203 AKPCKRLTR--SMLKVEGIKSEVNADDDHVNPEKDAIGSEDNCVDVSG 248


>At1g78910.1 68414.m09199 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 478

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 462 TPQIQPYSPPAKRSDE*IDAICNHADLSSPRVCLQPR--CSRPPF*QRFLPGRNAGRPG 292
           T  I+ YS  A      I    N A L  P+    PR   S PPF    LPG+NAG  G
Sbjct: 14  TVLIRRYSRVAPPPSSVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADG 72


>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 822

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 318 EEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSD 479
           +EI     D Y   EG  EE+  ++    R     + L E C  E+VES    D
Sbjct: 48  DEIDSAYGDFYEYEEGVPEEESRKNNRYERVVNYEFELAEDCEDENVESEDDDD 101


>At3g22410.1 68416.m02827 expressed protein
          Length = 400

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +3

Query: 180 CSRPPCEQRILPPVASPCCRGSRPWSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVV 359
           C+R  C +R L        + ++  SS  S    ++ N D++    EE S + +DG   +
Sbjct: 29  CNRE-CVERFLKVKGDNVKKAAKQLSSCLS----WRQNFDIERLGAEEFSTELSDGVAYI 83

Query: 360 EGKHEEKK 383
            G   E +
Sbjct: 84  SGHDRESR 91


>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 991

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -3

Query: 483 HHLKTAGTPQIQPYSPPAKRSDE*IDAICNHADLSSPRVCLQPRCSRP 340
           HHL  +   ++ P S P   S      +  H   SS      PRCS+P
Sbjct: 26  HHLALSSKARVFPLSLPCNFSSRVSFKLQLHCAASSSSSVSPPRCSKP 73


>At1g34180.1 68414.m04239 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM-like protein GI:8809651 from (Arabidopsis
           thaliana)
          Length = 564

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 357 VEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPR 506
           +E    E  D  G   RQF     +P+G +AE ++S L ++     I PR
Sbjct: 229 IEKLLNEIPDAPGVNQRQFDEFVGVPQGNSAEVIQSTLLNNSSGEYIDPR 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,741
Number of Sequences: 28952
Number of extensions: 336802
Number of successful extensions: 896
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)