Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1002
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660 63 2e-10
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749 52 4e-07
02_04_0361 - 22359278-22359439,22362291-22362728 48 9e-06
01_05_0324 - 20946774-20946935,20947301-20947780 45 7e-05
01_06_0783 + 31975261-31975398,31975583-31975726 44 1e-04
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 32 0.50
09_04_0584 - 18714461-18716296 29 3.5
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97... 28 6.2
03_01_0655 + 4797516-4797624,4797716-4798485,4798988-4799049,479... 28 6.2
>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
Length = 111
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/49 (59%), Positives = 36/49 (73%)
Frame = +3
Query: 108 KAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 254
K +K+ADM EEM+Q+A D A A EK +EKDIA +IKKEFDK + PT
Sbjct: 46 KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPT 94
>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
Length = 135
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/53 (49%), Positives = 34/53 (64%)
Frame = +3
Query: 96 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 254
+ K IK+A+M EEM+Q+A D A EK +EKDI +I KEFDK + PT
Sbjct: 54 LAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYI-KEFDKNHGPT 105
>02_04_0361 - 22359278-22359439,22362291-22362728
Length = 199
Score = 47.6 bits (108), Expect = 9e-06
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +2
Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 358
HCIVG FGSYVTH F+YF + +V +LLF++
Sbjct: 157 HCIVGTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +3
Query: 72 KQKQTQDKMCDRKAVIK--NADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDK 239
K+K+ + +RK ++ ADM MQ+ AV A A+ K +A +KKEFD
Sbjct: 91 KEKEMEKGKEERKVSVRVRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDA 150
Query: 240 KYNP 251
Y P
Sbjct: 151 TYGP 154
>01_05_0324 - 20946774-20946935,20947301-20947780
Length = 213
Score = 44.8 bits (101), Expect = 7e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +2
Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 358
HCIVG ++GS+VTH F+YF + ++ ++LFK+
Sbjct: 171 HCIVGTSYGSFVTHARGCFLYFSMDKIIVMLFKT 204
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = +3
Query: 126 ADMSEEMQQDAVDCATQA---LEKFNIEKDIAAFIKKEFDKKYNPT 254
ADMS MQ A CA ++ L+KF+ + +A +KKEFDK Y PT
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPT 169
>01_06_0783 + 31975261-31975398,31975583-31975726
Length = 93
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Frame = +3
Query: 96 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKYNP 251
M + KA++++ DM +MQ A+ A +AL++F++ + IAA IKKEFD + P
Sbjct: 1 MLEGKAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGP 54
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 260 CIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 355
C+VG +FG Y TH FIYF LG + L+FK
Sbjct: 58 CVVGASFGCYFTHSKGSFIYFKLGALRFLVFK 89
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 54 EFVHLSKQKQTQDKMCDRKA-VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKE 230
EF L +++ + CD + +N + EE Q +DC + E+F+ E+D IK
Sbjct: 567 EFERLLQEELARAIECDVDSETTENCKLREEQIQRIIDCQVKDAEEFDAEQD--ELIKTH 624
Query: 231 FDKKYN 248
+KK N
Sbjct: 625 EEKKAN 630
>09_04_0584 - 18714461-18716296
Length = 611
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +3
Query: 6 LWKVGIESPVIKILT*EF----VHLSKQKQTQDKMCDRKAVI 119
+WKVG+ + VIK ++ F H+ K K QDKM ++++I
Sbjct: 238 VWKVGVLTGVIKHMSPNFDKIRNHVRKSKCLQDKMTAKESLI 279
>06_01_0125 +
970746-970967,971126-971226,971897-972026,972108-972333,
972400-972502,972519-972594,972710-973333
Length = 493
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 75 QKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEK 188
Q + ++K C KA + + S + +QD +D Q EK
Sbjct: 259 QHRKRNKFCGHKAAVDRLNESGKNEQDRIDDVVQMYEK 296
>03_01_0655 +
4797516-4797624,4797716-4798485,4798988-4799049,
4799267-4799336,4799971-4800058,4801070-4801227,
4801316-4801459,4801561-4801689,4801797-4801964
Length = 565
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 153 DAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTGIASWVVILAR 287
DA+ AT L E++IAA I K + P+ IA ++V A+
Sbjct: 477 DAIVTATDGLFDNVYEEEIAAVISKSLEAGLKPSEIAEFLVARAK 521
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,871,959
Number of Sequences: 37544
Number of extensions: 351266
Number of successful extensions: 888
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -