Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1002
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light ch...   105   4e-23
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    49   4e-06
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    48   5e-06
Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    35   0.049
AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical ...    35   0.064
AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical ...    35   0.064
AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical ...    30   1.4  
AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    28   7.4  
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z81473-6|CAB03895.2|  657|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light chain
           protein 1 protein.
          Length = 89

 Score =  105 bits (251), Expect = 4e-23
 Identities = 47/53 (88%), Positives = 52/53 (98%)
 Frame = +3

Query: 96  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 254
           M DRKAVIKNADMS++MQQDA+DCATQALEK+NIEKDIAA+IKKEFDKKYNPT
Sbjct: 1   MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPT 53



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 361
           HCIVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 55  HCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
           protein M18.2 protein.
          Length = 90

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/71 (32%), Positives = 40/71 (56%)
 Frame = +3

Query: 96  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTGIASWVV 275
           M + K  +K  DM +  +   +    +A   +NI+KD+AAF+K+E DKK+     A+W V
Sbjct: 1   MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFG----ATWHV 56

Query: 276 ILARM*HTRLA 308
           I  +   +R++
Sbjct: 57  ICGKCFGSRVS 67



 Score = 34.3 bits (75), Expect = 0.085
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 361
           H I G+ FGS V++E  HFI     +V ++++K G
Sbjct: 55  HVICGKCFGSRVSYEMGHFILLKCNKVNVMIYKCG 89


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 358
           HCI G++FGS+VT E   FIYF +G +A +LFK+
Sbjct: 107 HCICGKHFGSFVTFEPDSFIYFRIGTIAFMLFKT 140



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 15/47 (31%), Positives = 30/47 (63%)
 Frame = +3

Query: 111 AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNP 251
           A ++++ M   M+Q+A   A +++  +++E DIA  +K  FD++Y P
Sbjct: 58  ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGP 104


>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
 Frame = -1

Query: 263 CNAGRIVFLVKFFLDECSYVL--FNVKFLERLSCTVNSILLH----LFAHVSILY----- 117
           C+A  + +L+  +L  C Y L  FN+KFL ++ C   ++L+H     F H+  LY     
Sbjct: 34  CSAVAVFYLIHTWLSICRYKLMHFNLKFLMKIHCA--ALLIHCVPRFFLHLFDLYYYFFG 91

Query: 116 -DCFAITHLVLGLFLLR 69
            DC+ +    L  F+LR
Sbjct: 92  VDCYDMQPSSLRCFILR 108


>AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2b protein.
          Length = 129

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 13/32 (40%), Positives = 25/32 (78%)
 Frame = +2

Query: 260 CIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 355
           C+VGRNFGS++  +   FI+F + +++++LF+
Sbjct: 100 CVVGRNFGSHL--DPIQFIHFTVSKISVILFR 129



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +3

Query: 114 VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKY 245
           +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY
Sbjct: 51  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKY 94


>AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2a protein.
          Length = 111

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 13/32 (40%), Positives = 25/32 (78%)
 Frame = +2

Query: 260 CIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 355
           C+VGRNFGS++  +   FI+F + +++++LF+
Sbjct: 82  CVVGRNFGSHL--DPIQFIHFTVSKISVILFR 111



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +3

Query: 114 VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKY 245
           +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY
Sbjct: 33  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKY 76


>AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical
           protein Y10G11A.3 protein.
          Length = 134

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 114 VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKK 242
           +I+  ++  E  +++      AL+   IE +IA+F+K++FD K
Sbjct: 50  IIQETNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAK 92


>AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.6 protein.
          Length = 280

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 560 TVHPLSHSLENRSHQH*LASSCHTLAASYLWECTTARASHEN 435
           T+HPL    EN    H L   C +L    LW+C T R  + +
Sbjct: 118 TIHPLPFFSEN----HLLIILCSSLITVNLWKCQTCRKKYSS 155


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -2

Query: 424 YPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAKI 275
           Y  D    + + KI  +L  LTA K  +   S V+V EV     HI+  I
Sbjct: 642 YHLDERDDSLDSKIGAILKKLTADKNAWPFASPVDVKEVPEYYDHIKHPI 691


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 227 FLDECSYVLFNVKFLERLSCTVNSILLHLFAH--VSILYDCFAITHLVLGLFLLR 69
           ++D C+  LFN+   +R++    +  + +F H  V ++Y  ++ + ++L   +LR
Sbjct: 520 WMDVCTLPLFNITLSQRIATFATAPFMSIFLHWMVGMVYVFYSASFVILLREILR 574


>Z81473-6|CAB03895.2|  657|Caenorhabditis elegans Hypothetical
           protein C17D12.7 protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 27/98 (27%), Positives = 44/98 (44%)
 Frame = -2

Query: 445 RMRICKGYPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAKITTH 266
           R+ +C+  P  +   +  KKI   +      K   S LS  E  E+ S     + K    
Sbjct: 49  RLDLCQISPKKSEKKSKKKKIPSPIKKTNDTK--LSILS--EKSEIRSEKHKNKCKSADL 104

Query: 265 DAMPVGLYFLSNSFLMNAAMSFSMLNFSSA*VAQSTAS 152
           DAM      L  +F  NAA+S S+ + +S+ ++ S +S
Sbjct: 105 DAMEKNFKELLENFSKNAALSNSLRDEASSIISSSASS 142


>Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical
           protein C39E9.8b protein.
          Length = 246

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 138 EEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYN 248
           EEM+  A DC     +KF+        +KK FD+K N
Sbjct: 60  EEMKLQAKDCTVPCFQKFSSITSRPNDLKKCFDEKDN 96


>Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical
           protein C39E9.8a protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 138 EEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYN 248
           EEM+  A DC     +KF+        +KK FD+K N
Sbjct: 60  EEMKLQAKDCTVPCFQKFSSITSRPNDLKKCFDEKDN 96


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = -3

Query: 300 SCVTYEPKLRPTMQCR*DCISCQILS**MQLCPFQC*ISRALELHSQQHLAASLRSCQHS 121
           +CVT     RP  QC   C+     S    +CP QC  S  +    Q  +  +   C   
Sbjct: 292 ACVTNLQVSRPVSQCLPACMPSCTSSCVQSMCPQQCYPSCDMNCIQQYAVQMAPTPCAAQ 351

Query: 120 L*LLCDHTSCL 88
              LC+ +SC+
Sbjct: 352 CMPLCE-SSCI 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,538,013
Number of Sequences: 27780
Number of extensions: 318656
Number of successful extensions: 868
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)