Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0992
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.28
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo... 28 1.1
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 28 1.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.4
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 27 3.4
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 27 3.4
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 27 3.4
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 26 6.0
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 26 6.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 7.9
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.9
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 140 SSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLSI 6
S+ + S + S +TS DS++S T+ TSQG +SS S+
Sbjct: 841 SNSITSLNLESTSSVTSTAYTTDSVTSTTALTSQGPSSSVVSSSL 885
>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 1 ERIERGVDEEFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGE 138
ER++ V+E + L KE++L + SI+T D++ D+ A +
Sbjct: 158 ERLDPEVNESTIGRLKKELNLPVSSILTLDDIVDFTKSDLTAAESK 203
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 107 ISVMTSRLVMMD-SISSDTSFTSQGMNSSSTPLS 9
+ ++T+R M ++S+DTS + M +S+TP+S
Sbjct: 45 LQILTARAAMAAMNMSNDTSMSGMNMTNSTTPMS 78
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -1
Query: 140 SSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
SSP +S+T+ T S +S S SS +S +S +SSS+ S
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = -1
Query: 140 SSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
SS AST+ + SV+ S M S SS T+ +S +SSS+PLS
Sbjct: 27 SSAAASTSLSSSSVIPSSSSSMLSSSSATAISS---SSSSSPLS 67
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 140 SSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
SSP +S+ S T S S ++SS +S +S + SSS+ S
Sbjct: 348 SSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSS 391
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -1
Query: 140 SSPLASTTS--RTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
SSP +S++S + S+ TS + S SS TS + +SSST S
Sbjct: 220 SSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASS 265
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 498 MPI*CMYI*TSAYLKRHNNTNKHYKHD 418
+PI C+++ +S L RHNN ++ H+
Sbjct: 347 IPIRCIHLQSSEELARHNNVFRYIHHN 373
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -1
Query: 149 FLYSSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLSI 6
F+Y P+ +T + +S+L ++DSI ++ G S+ I
Sbjct: 247 FIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADI 294
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 64 EIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRNEPED 198
EI + +RD EIV ++ E R RN+ E E EQ +NE +
Sbjct: 508 EINELQDNRDAALEIVTNIFEQR----RNINEL-EREQSQNEDHE 547
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 87 TRDDGLDLQ*HFLHQPRHELFIDSSLYSL 1
+RDDGLDL FLH F S Y +
Sbjct: 189 SRDDGLDLLLGFLHHCESSWFKRSIFYKI 217
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 28 EFMPWLVKEVSLEIESIITSRDVITEIVRD---VVEARGELYRNV 153
E+ L+ E EIE++ + + EI RD ++ +GEL N+
Sbjct: 166 EYQQRLINERQGEIENLTQGINELNEIFRDLSTIINEQGELVTNI 210
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 155 ATFLYSSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSST 18
+T+L SS + ++ T + + V S SS TS+TS +SSST
Sbjct: 965 STYL-SSGFQTVSNTTATSGSDDDVKTASTSSSTSYTSSSSSSSST 1009
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 140 SSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
SS ++STTS + S S S SS +S +S +SSS+ S
Sbjct: 126 SSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSS 169
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 128 ASTTSRTISVMTSRLVMMDS--ISSDTSFTSQGMNSSSTPLS 9
+ST + SV+ S + S ++S T TS + +SSTP+S
Sbjct: 3440 SSTPITSSSVLNSSTAIASSSILNSSTPITSSSVLNSSTPIS 3481
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,157
Number of Sequences: 5004
Number of extensions: 50163
Number of successful extensions: 158
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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