Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0989
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    66   6e-12
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    46   5e-06
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    31   0.21 
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    29   0.48 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    29   0.85 
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    27   3.4  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   4.5  
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    26   4.5  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   6.0  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   6.0  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   7.9  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 65.7 bits (153), Expect = 6e-12
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 10/152 (6%)
 Frame = +3

Query: 261 THLCIRELEKKGKVTSIVTQNVDRLHHKAG--SEKVIELHGTSYLVQCLKCPYEIDRHEL 434
           +H  IR LEKK K++++ TQN+D L  K G    K+I+ HG+     C+KC +++D  EL
Sbjct: 227 SHAFIRLLEKKNKLSTLFTQNIDNLEKKTGLSDNKIIQCHGSFATATCIKCKHKVDGSEL 286

Query: 435 QEILTENNPDMESSFS----MIRPDGDVDCRGNK*KNSELHSAQ---SVKGPLKPDIVFF 593
            E +        +        +R  G      +   + +  S++   +  G +KPDI FF
Sbjct: 287 YEDIRNQRVSYCNECGKPPLKLRRVGQNKKEKHYFSDGDSESSEDDLAQPGIMKPDITFF 346

Query: 594 GDNVPKYRVEQVRK-XVTSSDAVFVMGSSLTV 686
           G+ +P     +V    +  +D +  +G+SL V
Sbjct: 347 GEALPDSFFNKVGSGELEETDLLICIGTSLKV 378


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
 Frame = +3

Query: 261 THLCIRELEKKGKVTSIVTQNVDRLHHKAG--SEKVIELHGTSYLVQCLKCPYEIDRHEL 434
           TH  IR L  K  +    TQN+D L   AG   + +IE HG+    +C++C      +E+
Sbjct: 99  THYFIRLLHDKRLLQKCYTQNIDTLERLAGVPDKALIEAHGSFQYSRCIEC------YEM 152

Query: 435 QEILTENNPDMESSFSMIRPDGDVDCRGNK*KNSELHSAQSVKGPLKPDIVFFGDNVPKY 614
            E  TE           +R      C   K    ++    S KG +KP IVF+G+ +P  
Sbjct: 153 AE--TE----------YVRA-----CIMQK----QVPKCNSCKGLIKPMIVFYGEGLPMR 191

Query: 615 RVEQVRKXVTSSDAVFVMGSSLTVY 689
             E + K     D   V+G+SL V+
Sbjct: 192 FFEHMEKDTKVCDMALVIGTSLLVH 216



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 100 GIPDYRSEDVGLYARSNHKPIQYQEFV 180
           GIPD+RS + G+Y       + Y E V
Sbjct: 43  GIPDFRSPETGIYNNLQRFNLPYAEAV 69


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +3

Query: 237  IQLCATNXTHLCIRELEK--KGKVTSIVTQNVDRLHHKAGSEKVIEL-HGTSYLVQCLKC 407
            ++L A N    C+  + K   G+  +I      ++  K+   K+  + H TSY +Q ++ 
Sbjct: 959  LELFAANGLSTCVHRIGKVLSGQAQTISFSRSGKIIFKSTRSKLHGIWHETSYKMQEIRD 1018

Query: 408  PYEIDRHELQEILTENNPDM 467
              E  R E++ I   N+P +
Sbjct: 1019 NPECARQEMENIADNNDPGL 1038


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = +3

Query: 183 VSESKAKVLGKKLYRLAEIQLCATNXTHLCIRELEKKGKVTSIVTQNVDRLHHKAGSEKV 362
           ++E+ A+V GK++Y   +I+    +        + +     ++V  N  R   +  + +V
Sbjct: 192 INETVAQVSGKQIYNTEKIRSNICDAVQSSRNGICRHVDARAMVNLNHSRWERRYYARQV 251

Query: 363 IELHGTSYLVQCL 401
             LH   YL +CL
Sbjct: 252 TYLHNNGYLRKCL 264


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 231 PTYIISCPVPLPYFRILHKFLILYRFVITTGIQTNILRSVVR 106
           PTY+   P+  PYFR L    + YR  +T  ++   + + +R
Sbjct: 335 PTYVP--PIARPYFRQLLSLCLEYRLQVTDPVEVKQINTFIR 374


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +3

Query: 351 SEKVIELHGTSYL-----VQCLKCPYEIDRHELQEILTENNPDMESSFS 482
           +EKV+  +G SY      +Q  KCP+ I+ +     +  +NP+M S ++
Sbjct: 82  NEKVVGQNGDSYKEKDLKIQLGKCPFTINAYWRSMCIQFDNPEMLSQWA 130


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 217 FLPSTFALLSDTSQILDTV*VCDYYGHTDQHPPIC 113
           FL S F +   T+Q + T+ +C ++G      P+C
Sbjct: 212 FLFSVFQIAVATAQDIQTIMICRFFGGYGACVPLC 246


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 552 QSVKGPLKPDIVFFGDNVPK 611
           Q   GP+K D  FF +N PK
Sbjct: 127 QKRSGPVKKDEAFFAENAPK 146


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 607 GTLSPKNTISGFKGPFTLWAEWSSEFFYL-FPRQSTSPSGLIMEKL 473
           GT++   T S  + PF +    S +FFYL F     S  GL ++ L
Sbjct: 353 GTIAIPLTSSKTETPFVVLVHTSGQFFYLDFLLDGKSVKGLSLQAL 398


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/86 (23%), Positives = 43/86 (50%)
 Frame = +3

Query: 90  VVVRYS*LQIGGCWSVCP**SQTYTVSRICEVSESKAKVLGKKLYRLAEIQLCATNXTHL 269
           +V  +S L+I     V P  SQ  TVS   ++  SK +  GK+  R+++    ++N   +
Sbjct: 535 IVTFFSILRIRSS-EVRPLKSQKNTVSINNKIDTSKRRRKGKRRKRVSDEHSASSNFNEI 593

Query: 270 CIRELEKKGKVTSIVTQNVDRLHHKA 347
             +   ++ +   I+++N+  +  K+
Sbjct: 594 ESQASFEQNQTLDILSENIVEIQDKS 619


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -3

Query: 381 LSHVIQSLFQN--QLCGVIYPHSVSL*MSLFPSSLVLEYRDV*XWLHTTESRPTYIISCP 208
           + H+I S   N  +LC  +  +S++L +S+F  SL+  +RDV   L T++     ++   
Sbjct: 377 VGHLIGSGRANLARLCSRV-AYSLALCISIFDGSLIFCFRDVWGSLFTSDPEVLAVVKDI 435

Query: 207 VPL 199
            P+
Sbjct: 436 FPI 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,939
Number of Sequences: 5004
Number of extensions: 69279
Number of successful extensions: 197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)