Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0989
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0509 - 4029739-4029890,4031064-4031208,4031665-4031709,403...   115   3e-26
04_03_0112 - 11369013-11369193,11369194-11369354,11370281-113703...    54   1e-07
05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053     29   4.7  
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221...    28   6.2  

>12_01_0509 -
           4029739-4029890,4031064-4031208,4031665-4031709,
           4031800-4031899,4032013-4032140,4032548-4032712,
           4033033-4033162,4033252-4033412,4034306-4034351,
           4034429-4034494,4034579-4034664,4035811-4035849
          Length = 420

 Score =  115 bits (277), Expect = 3e-26
 Identities = 67/164 (40%), Positives = 92/164 (56%), Gaps = 16/164 (9%)
 Frame = +3

Query: 255 NXTHLCIRELEKKGKVTSIVTQNVDRLHHKAGSEKVIELHGTSYLVQCLKCPYEIDRHEL 434
           N  H  +  LE+ G+V S+VTQNVDRLHH+AGS K +ELHG+ Y V CL C   IDR   
Sbjct: 108 NSAHYALASLERIGRVHSMVTQNVDRLHHRAGS-KPVELHGSVYEVACLDCGTSIDRESF 166

Query: 435 QEILTENNPDM--------------ESSFSMI-RPDGDVDCRGNK*KNS-ELHSAQSVKG 566
           QE + + NP                + SF M  RPDGD++      +   ++ S     G
Sbjct: 167 QEQVKDLNPKWALAIDSLEVGQPGSDKSFGMQQRPDGDIEIDEKFWEQDFDIPSCNQCGG 226

Query: 567 PLKPDIVFFGDNVPKYRVEQVRKXVTSSDAVFVMGSSLTVYSSY 698
            LKPD+V FGDNVP+ R E  ++   + DA+ V+GS+L   S++
Sbjct: 227 VLKPDVVMFGDNVPEERAESTKEAARNCDALLVVGSALMTMSAF 270



 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 30/54 (55%), Positives = 38/54 (70%)
 Frame = +1

Query: 100 GIPDYRSEDVGLYARSNHKPIQYQEFVKYPKVRQRYWARNYIGWPRFSCVQPTS 261
           GIPDYRS + G Y+ S  KP+ +QEFV+  + R+RYWAR+Y GW RF   QP S
Sbjct: 58  GIPDYRSPN-GAYS-SGFKPLTHQEFVRSIRARRRYWARSYAGWRRFRRAQPNS 109


>04_03_0112 -
           11369013-11369193,11369194-11369354,11370281-11370383,
           11370467-11370534,11372340-11372393,11374173-11374251,
           11376054-11376133,11376584-11376692,11376813-11376913,
           11378407-11378526,11379613-11379642,11380591-11380689
          Length = 394

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
 Frame = +3

Query: 261 THLCIRELEKKGKVTSIVTQNVDRLHHKAG--SEKVIELHGTSYLVQCLKCPYEIDR-HE 431
           TH+ + ELEK G++  +++QNVD LH ++G   EK+ ELHG S+   C  C  E  R  E
Sbjct: 64  THMALVELEKTGRLKFVISQNVDSLHLRSGLPREKLAELHGNSFKEICPSCKKEYLRDFE 123

Query: 432 LQEILTENNP 461
           ++ I  ++ P
Sbjct: 124 IETIGLKDTP 133


>05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053
          Length = 576

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 423 RHELQEILTENNPDMESSFSMIRPDGDVDCR 515
           R E++E+L  N+ D ++  SM+  DG ++C+
Sbjct: 140 RFEIEEVLHVNSDDSQNLPSMVSSDGCLNCK 170


>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
            17722189-17722332,17722415-17722722,17723433-17723568,
            17723748-17723841,17723976-17724073,17724951-17725004,
            17725704-17726150,17726227-17726393,17726540-17726663,
            17726751-17726837,17727000-17727056,17727492-17727560,
            17727664-17727811,17727893-17728116,17728842-17728958,
            17729649-17729742,17730573-17730640,17733278-17733334,
            17733412-17733511,17733638-17733674,17734077-17734200,
            17735254-17735322,17735371-17735410,17735905-17735993,
            17736849-17736953,17737033-17737104,17737814-17737936,
            17738049-17738117,17738966-17739059,17739145-17739231,
            17740184-17740351,17740436-17740552,17741484-17741590,
            17741671-17741803,17742564-17742667,17743504-17743629,
            17744148-17744216,17744996-17745064,17745278-17745358,
            17745444-17745533,17745896-17746000,17747803-17747873,
            17748320-17748461,17749266-17749330,17750081-17750168,
            17750236-17750325,17750437-17750673,17751064-17751170,
            17751625-17751832,17752376-17752546
          Length = 2366

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 91   WSLGIPDYRSEDVGLYARSNHKP 159
            W   + DY S   GL++R NHKP
Sbjct: 1504 WIGALKDYSSISFGLHSRINHKP 1526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,767,745
Number of Sequences: 37544
Number of extensions: 404980
Number of successful extensions: 890
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)