Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0983
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.0  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   6.0  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   7.9  
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.9  

>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 172 NFQRLTHFL*YWRYKCSRH 228
           N  R+ H + +W YK SRH
Sbjct: 521 NRARIAHSIYHWEYKVSRH 539


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 15  VFFFFFLSQNPFYFLMIFSKH 77
           V +FF L  NPF  LM+FS H
Sbjct: 124 VSYFFSLKNNPF-CLMLFSSH 143


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +2

Query: 227 IFSVTEYFQSLQSGFSIEGSYTISAPSITSGLLFGRSVISFQSNILTSVSESPVKIGPAV 406
           ++S T   QS QS  +I+    +    I   L        FQ+ I + + ESP KI  A+
Sbjct: 746 MYSDTSKSQSQQSVTTIDNKVNLLCKIIREHLTSKYGDTHFQAIITSYLCESPPKIEAAL 805

Query: 407 PEIS 418
             IS
Sbjct: 806 GMIS 809


>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 461 NRFSSVINIKLETEYQELVNFKKKAKNSVKIGNHILAHCSSHFINRQ 601
           +RF S +N++ E    E++ FK+     VK+ N++L   SS  + ++
Sbjct: 51  DRFRSNLNVQQEQLQNEILGFKQ----DVKLLNNVLVSYSSEELEKR 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,101
Number of Sequences: 5004
Number of extensions: 59134
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)