Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0983
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68)               28   8.4  

>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 512 LVNFKKKAKNSVKIGNHILAHCSSHFINRQDNINNRCRR 628
           L N+K + +N V +   +L   S++   RQ N    CRR
Sbjct: 332 LFNYKARYENDVSVEPRVLPTISAYSTTRQTNPKGGCRR 370


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 266 GFSIEGSYTISAPSITSGLLFGRSVISFQSNILTSVSESPVKIGPAV 406
           GF  EG Y + AP +T G + GR+ ++    +L ++   P+ +GP +
Sbjct: 339 GF-FEGCYVLLAPVLT-GDIVGRNNMATGVGVLFAIKSVPLTLGPPI 383


>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 861

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/67 (23%), Positives = 37/67 (55%)
 Frame = +3

Query: 273 VLKDHIQYLHQVLHRAFYLVDR*FHSNLTS*HLSVKVPSKSVQPFQRLATLLTLSNSYVV 452
           +L+D+  +  +++ +   L++  F+S+L    +   +PS++++   R    L  S S ++
Sbjct: 791 ILRDYSNHRQELIGKIVNLMEDVFNSHLARWEVRAPMPSQAMRGIVRQIIKLHESLSAIL 850

Query: 453 PSKIVLV 473
           PSK + V
Sbjct: 851 PSKQIEV 857


>SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68)
          Length = 1113

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 691 LNTGTVASL-DTKTSSVLSFRPTTTTIINIVLSVYKMRTTMCQNVIANFNGIL 536
           +NT TV ++ DT T  +++  PTT    N + +V     T   N   N  G++
Sbjct: 265 INTITVKTVGDTDTGRIITI-PTTPIASNAITTVQSKSPTWTSNACTNTTGLI 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,889,075
Number of Sequences: 59808
Number of extensions: 387445
Number of successful extensions: 967
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)