Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0983
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical pr...    35   0.064
AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical ...    31   1.0  
AF106581-6|ABC48242.1|  386|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    29   4.2  

>Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical
           protein R08D7.4 protein.
          Length = 371

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 366 VKMLDWNEITDLPNKRP-DVILGADIVYDPSILKPLCN 256
           V+ L+W +      K P D+I+ AD+VYD ++L  LCN
Sbjct: 249 VRSLNWCDFDFSEWKEPTDLIIAADVVYDTALLASLCN 286


>AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical
           protein F18A12.1 protein.
          Length = 726

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +2

Query: 470 SSVINIKLETEYQELVNFKKKAKNSVKIGNHILAHCSSHFINRQDNINNRCRRGPKR 640
           + V ++KLE   +E++N  +K     K+   ++AH  S F + + N+    +  PKR
Sbjct: 306 AQVPSLKLEKIIEEMMNPNRKKLLVTKVKPRMVAHKHSLFFDEKMNLEKLLKSTPKR 362


>AF106581-6|ABC48242.1|  386|Caenorhabditis elegans Hypothetical
           protein VC5.6 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -2

Query: 484 IYH*TKTIFDGTTYELDNVSRVANLWNGWTDFDGTFTDRC*DVRL 350
           +Y+ T+ +   T+Y LD VSR+ + +  W DF  T  D   D +L
Sbjct: 235 VYY-TRHLCTPTSYSLDEVSRIFSPY--WADFRKTLVDPVIDAKL 276


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
           protein F18C12.2b protein.
          Length = 2271

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -2

Query: 208 ASIIRNELTFESFLQVL--ETYNFHCEKLMQPTNAHIEWDHT 89
           A +I NE T E F   +  ET     EK   PT   I W+HT
Sbjct: 778 ADLIWNEKTREEFRHAMDTETRALISEKEQAPTGLPIAWNHT 819


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
           protein F18C12.2a protein.
          Length = 2279

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -2

Query: 208 ASIIRNELTFESFLQVL--ETYNFHCEKLMQPTNAHIEWDHT 89
           A +I NE T E F   +  ET     EK   PT   I W+HT
Sbjct: 778 ADLIWNEKTREEFRHAMDTETRALISEKEQAPTGLPIAWNHT 819


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
           protein RME-8 protein.
          Length = 2279

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -2

Query: 208 ASIIRNELTFESFLQVL--ETYNFHCEKLMQPTNAHIEWDHT 89
           A +I NE T E F   +  ET     EK   PT   I W+HT
Sbjct: 778 ADLIWNEKTREEFRHAMDTETRALISEKEQAPTGLPIAWNHT 819


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,322,254
Number of Sequences: 27780
Number of extensions: 325766
Number of successful extensions: 916
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)