Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0981
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 2.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.6
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 26 4.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 4.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 6.0
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 6.0
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 6.0
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 7.9
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 7.9
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 223 QLHMTTGTRECLTSIRKANHFFCIFKDASLIF 318
+ H TTGT SI++ H++ +F+ A F
Sbjct: 630 ETHDTTGTSNFAVSIQQEKHYYPVFQPAPTEF 661
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 394 PPPADSVVLPAATDAVATRDASPPPPVATATRDGGPPL 507
PPP+ V +A A + PPPP + G PP+
Sbjct: 293 PPPSSRV---SAAALAANKKRPPPPPPPSRRNRGKPPI 327
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = +1
Query: 391 RPPPADSVVL----PAATDAVATRDASPPPPVATATRDGGPPL 507
+PPP S PA A+ R A PP+ A+R PP+
Sbjct: 375 QPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 394 PPPADSVVLPAATDAVATRDASPPPPVATATRDGGPPLRAVVGADAAAIY 543
PPP + +A+ A A + PP A + PP AV G + +
Sbjct: 9 PPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPPTAVQGGSSPGFF 58
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Frame = +1
Query: 394 PPPADSVVLP-AATDAVATRDASPP--PPVATATRDGGPPLRAVV 519
PPP + LP A + A A PP PP G P + A V
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPV 1926
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 445 TRDASPPPPVATATRDGGPPLRAVVGA 525
+ A+PPPP A GPP A A
Sbjct: 1877 SNQAAPPPPPPMALPKAGPPSAAPTSA 1903
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 379 LARVRPP-PADSVVLPAATDAVATRDASPPPPVATATRDGGPPL 507
+A VR P P S PAA ++ PPPP + P +
Sbjct: 880 MAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAI 923
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 421 PAATDAVATRDASPPPPVATATRDGGPPLRAVVGADAAAI 540
P T ++ + PPP T T+ L A AAA+
Sbjct: 163 PKVTSESTKKETAAPPPQETPTKSADAELAKTPSAPAAAL 202
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 6.0
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Frame = +1
Query: 394 PPPADSVVLPAATDAVATRDASPPPPVATATRDGGPPLRAVVGADAA----AIYLLL*SS 561
PPP V+P A T + P A A PP A A AA A+Y +
Sbjct: 366 PPPP---VMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAPAAEHVVALYDYAAQA 422
Query: 562 RGEKEFH 582
G+ FH
Sbjct: 423 AGDLSFH 429
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 433 DAVATRDASPPPPVATA 483
D +A +A+PPPP+A A
Sbjct: 212 DDIANNNAAPPPPLAQA 228
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 99 CGNAQLGYVLCSRVLTEVGLQRR*CRSIIKL*I*FKNNTRASIAY 233
C N+ +VLC ++ +G Q + S +++ ++ NT + IA+
Sbjct: 708 CSNSLFYFVLCMQLEESIGTQEQRLLSFLRV---YEKNTLSEIAH 749
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,154
Number of Sequences: 5004
Number of extensions: 48517
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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