Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0981
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.52 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.5  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 530 ASAPTTARSGGPPSRVAVATG 468
           ASAP+++ S  PP++ A A G
Sbjct: 518 ASAPSSSTSSSPPAKGAAAAG 538


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -1

Query: 572 FSPRLDYSSKYIAAASAPTTARSGGP 495
           F P  DY  KY+   S     R  GP
Sbjct: 147 FVPGDDYDGKYLVLPSGELHIRDVGP 172


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 478 TATRDGGPPLRAVVG 522
           T  R+GGPP  A  G
Sbjct: 406 TQKREGGPPTGATTG 420


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 478 TATRDGGPPLRAVVG 522
           T  R+GGPP  A  G
Sbjct: 426 TQKREGGPPTGATTG 440


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 478 TATRDGGPPLRAVVG 522
           T  R+GGPP  A  G
Sbjct: 375 TQKREGGPPTGATTG 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,326
Number of Sequences: 438
Number of extensions: 3873
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)