Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0980
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        31   0.91 
SB_13777| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)                     28   6.4  

>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 578 WFRSWCWFRSWCWIRSRSRKW 516
           WF+ W    + CWIR  SR W
Sbjct: 519 WFKCWIQLVNGCWIRLMSRLW 539


>SB_13777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 34  NIDVSRTNKKQGLFYIKN*QFTQGSAL 114
           N+ +SR NK+Q   Y +N +F  G+++
Sbjct: 72  NLKISRVNKRQACIYNQNFKFADGASV 98


>SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 2245

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = -2

Query: 572 RSWCWFRSWCWIRSRSRKWSCPXXXXXXXARNRLFWIWT 456
           R W W+R    IR R + W C         +    W W+
Sbjct: 463 RVWLWYRLLLCIRIRCKPWWCSIKIEWCSKKTFKEWWWS 501


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,356,008
Number of Sequences: 59808
Number of extensions: 166250
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)