Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0980
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   3.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   3.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   3.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.9  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 394 ILTTKRIRSLQVCYIRHL 447
           ++TT+R+RS+  C++  L
Sbjct: 62  VITTRRLRSVTNCFVSSL 79


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 231 RXRKCSFLCVICFISQL 181
           R RK  F+ ++CF+S L
Sbjct: 412 RKRKELFIAIVCFVSYL 428


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 231 RXRKCSFLCVICFISQL 181
           R RK  F+ ++CF+S L
Sbjct: 465 RKRKELFIAIVCFVSYL 481


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 438 PPFATYGPNPEEPVPGTSSSTSTR 509
           PP A +   PEE  PGT    + R
Sbjct: 170 PPLAGWNDWPEELEPGTPCQLTRR 193


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 438 PPFATYGPNPEEPVPGTSSSTSTR 509
           PP A +   PEE  PGT    + R
Sbjct: 170 PPLAGWNDWPEELEPGTPCQLTRR 193


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 438 PPFATYGPNPEEPVPGTSSSTSTR 509
           PP A +   PEE  PGT    + R
Sbjct: 170 PPLAGWNDWPEELEPGTPCQLTRR 193


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 16  FINEKKNIDVSRTNKKQGLFYIKN*QFTQGSALNLTTSCLLGIPQF 153
           F+NEK++     T   + +    +   T+   L +T SC + +  F
Sbjct: 100 FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYF 145


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 16  FINEKKNIDVSRTNKKQGLFYIKN*QFTQGSALNLTTSCLLGIPQF 153
           F+NEK++     T   + +    +   T+   L +T SC + +  F
Sbjct: 100 FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYF 145


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 16  FINEKKNIDVSRTNKKQGLFYIKN*QFTQGSALNLTTSCLLGIPQF 153
           F+NEK++     T   + +    +   T+   L +T SC + +  F
Sbjct: 39  FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYF 84


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = -2

Query: 584 WCWFRSWCWFRSWCWIRSRSRKWSC 510
           W  F+ W +   WC I      W C
Sbjct: 125 WEVFKVWIFGDLWCSIWLAVDVWMC 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,691
Number of Sequences: 438
Number of extensions: 1592
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)