Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0979
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    30   0.28 
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    27   2.0  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    27   3.4  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    27   3.4  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   4.5  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   6.0  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 449 LEEGYSVPVHSYTSITCHIRYSRETAAGPWSAKSSISCRTLPILRCKVAAFQFGWSS 279
           LEEG  +P  S    T  + Y+ E A   + A   + C TLP++  ++      W S
Sbjct: 437 LEEGLGLPSKSIYKKTIKLVYTSEHAEEMFKALERMPCLTLPLVISRLEEKNEEWKS 493


>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 287 SRTGMPPPYILVWARCGTRCYFLPTKDPQQFLW 385
           S TG+P P+I+  +R   R YF  T +  + LW
Sbjct: 2   SNTGLPKPWIVKISRSRNRPYFFNT-ETHESLW 33


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 326 PILRCKVAAFQFGWSSRYSCMSFHL 252
           P+LR K+AA   GW S  +C SF +
Sbjct: 60  PLLRTKLAAIHEGWES--ACHSFEI 82



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 594 RRRGRSFAVTVSNSERYGGSSALADNDEIPCGSRSLRETWSRGP 463
           R     FA+  +N+E+Y  S+ L   D       +L + +  GP
Sbjct: 271 RANQSDFALATANAEKYNASAILIFEDTYLTSLDNLNQVYPAGP 314


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 540 GSSALADNDEIPCGSRSLRETWSRGPVSVET 448
           GSS+L +  E  C    L E W   P ++++
Sbjct: 471 GSSSLKEQIEAGCSGLKLHEDWGSTPAAIDS 501


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 504 CGSRSLRETW-SRGPVSVET*GGVQCAGSQLY 412
           C    L+  W S  P   ET GG+ C G +LY
Sbjct: 213 CSPGMLKTQWPSTQPSDGETRGGLLCKGGKLY 244


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 28   SFINRSCWRPINAQNKTGKFPEKQ*NMSDFTGRSVFRNR*SDREAMEDLLHVEHEV 195
            S++ R C   INA+ +TG +      MS  T    +RN   DR A E  L +E  +
Sbjct: 971  SWLYRGCVITINAEYETGDYQMILRRMSGTTIYRFWRNM-RDRGAFEKSLMMEQSM 1025


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,643
Number of Sequences: 5004
Number of extensions: 70433
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)