Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0979
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 30 2.0
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 29 3.5
06_03_0568 + 22351552-22351679,22352176-22352227,22353044-223531... 29 4.7
08_02_0757 + 20840885-20841281,20842937-20843025,20843132-208432... 28 6.2
07_03_1490 - 26941322-26941417,26941850-26942377,26944590-269448... 28 6.2
07_03_1488 - 26925166-26925729,26927946-26928184,26929247-269296... 28 6.2
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 28 6.2
03_01_0355 - 2789680-2791263 28 8.2
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 28 8.2
>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 395 CGT*WKYNCEPAHCTPPQVSTETGPRLQVSRNDRLP 502
CG W C P HC + + L+V N LP
Sbjct: 1003 CGNKWYSKCSPVHCRKLDIPSSEVALLKVKTNINLP 1038
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = -2
Query: 340 RAAPCPY*DVRWRHSSSAGHQDTRACRSIS 251
+AAP P +VR++H+SS G +TR +++S
Sbjct: 321 KAAPGPPAEVRYQHASSMGAVETRKGKTMS 350
>06_03_0568 +
22351552-22351679,22352176-22352227,22353044-22353117,
22353233-22353322,22353833-22353976,22354885-22354973,
22355539-22355612,22357233-22357317,22357677-22357952,
22358392-22358420
Length = 346
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 166 PWLPYHFIDFEIRIFL*SLTYSIVFLE 86
PW+ IDF I +F S+ Y + FLE
Sbjct: 163 PWMAATLIDFYINVFAISVNYILWFLE 189
>08_02_0757 +
20840885-20841281,20842937-20843025,20843132-20843257,
20843617-20844333,20844420-20844630,20844739-20845238,
20845998-20846023,20846393-20846531,20846579-20846660,
20846990-20847153
Length = 816
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -3
Query: 627 LCFDHLNKYRSRRRGR-SFAVTVSNSERYGGSSALADNDE-IPCGS 496
L FD+L K+R R+R R S + S++ GSS+ D +E PCGS
Sbjct: 609 LKFDNL-KWRPRKRSRRSGSKRQSDTSSGSGSSSQGDMEESSPCGS 653
>07_03_1490 -
26941322-26941417,26941850-26942377,26944590-26944828,
26945891-26946318,26946728-26946837
Length = 466
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +2
Query: 71 IKPESFQKNNRICQTLQEDPYFEIDEVIGKPWRIYYTWNMRFEKKCMDMTFKNATPKIVQ 250
+ PE + NN + ++ D D ++ PW+ + R E + M F N T +++
Sbjct: 138 LDPEEYTVNNILPKSRHRDGSIYRD-IMDTPWKREFHIADRNETRLEAMRFSNPTNCVIR 196
Query: 251 RDGTTCTS 274
+G TC S
Sbjct: 197 SNG-TCMS 203
>07_03_1488 -
26925166-26925729,26927946-26928184,26929247-26929674,
26930084-26930193
Length = 446
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +2
Query: 71 IKPESFQKNNRICQTLQEDPYFEIDEVIGKPWRIYYTWNMRFEKKCMDMTFKNATPKIVQ 250
+ PE + NN + ++ D D ++ PW+ + R E + M F N T +++
Sbjct: 138 LDPEEYTVNNILPKSRHRDGSIYRD-IMDTPWKREFHIADRNETRLEAMRFSNPTNCVIR 196
Query: 251 RDGTTCTS 274
+G TC S
Sbjct: 197 SNG-TCMS 203
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 221 FKNATPKIVQRDGTTCTSILMTSRTGMPPPYILVWARCGTRC 346
+K +TP + +G C +LM + TG + V R GT+C
Sbjct: 3487 YKWSTPFSIDANGVMC--VLMNNTTGNDQALVRVNVRSGTKC 3526
>03_01_0355 - 2789680-2791263
Length = 527
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 153 ITSSISKYGSSCK-V*HILLFFWKLSGFILGIDWPPTTSINKTIANKVT 10
+ S +S +GSS K V L FF GF +G D+P + +I ANK T
Sbjct: 113 VASGLS-FGSSAKGVVSTLCFFRFWLGFGIGGDYPLSATIMSEYANKRT 160
>01_07_0019 +
40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 295 WNAATLHLSMGKVRHEMLLFADQG 366
W+A T L MG+ R LLFA G
Sbjct: 789 WSARTAALGMGRARRSKLLFAVDG 812
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,693,857
Number of Sequences: 37544
Number of extensions: 484585
Number of successful extensions: 1252
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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