Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0979
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018)                  32   0.39 
SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)           30   1.6  
SB_12634| Best HMM Match : Phage_fiber (HMM E-Value=8.7)               29   2.7  
SB_47878| Best HMM Match : PARP_regulatory (HMM E-Value=0.65)          29   3.6  
SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30)           29   4.8  
SB_29370| Best HMM Match : fn3 (HMM E-Value=0)                         29   4.8  
SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)               28   8.4  

>SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018)
          Length = 241

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 163 WLPYHFIDFEIRIFL*SLTYSIVFLETFRFYFGH*LAANN 44
           WLP H + F I   L S   S +FL  F F+ GH  +A N
Sbjct: 97  WLPLHVLHFLIYFDLMSFLCSPLFLRLFGFWLGHANSALN 136


>SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 163 WLPYHFIDFEIRIFL*SLTYSIVFLETFRFYFGH*LAANN 44
           WLP H + F I   L S   S +FL  F F+ GH  +A N
Sbjct: 252 WLPLHVLHFLIYFDLMSFLCSPLFLRLFGFWLGHANSALN 291


>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -3

Query: 660 GNSSKL*EQARLCFDHLNKYRSRRRGRSFAVTVSNSERYGGSSALADNDEIPCGSRSLRE 481
           G++SK  E+  +  DH    RSRR   S        E+    S ++   +I  G R+L+ 
Sbjct: 565 GDASKFGEKINISGDHSPPLRSRRYSASGFANSRRPEKSLKKSTISHVSDIKKGQRTLKS 624

Query: 480 TWSRG 466
             +RG
Sbjct: 625 CLNRG 629


>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
          Length = 806

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 422 EPAHCTPPQVSTETGPRLQVSRNDRLPHGISSL 520
           EPAH  P  ++TET P +Q       P  + SL
Sbjct: 393 EPAHLNPLPMTTETPPEIQAEMTKDTPQHVRSL 425


>SB_12634| Best HMM Match : Phage_fiber (HMM E-Value=8.7)
          Length = 59

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -2

Query: 310 RWR---HSSSAGHQDTRA-CRSISLNDFRRRIFKRHVHTL 203
           +WR   H+ +  H DT   C   +LND      KRH HT+
Sbjct: 3   KWRKPGHTHTVAHNDTHTTCTHCTLNDTHSVGTKRHAHTV 42


>SB_47878| Best HMM Match : PARP_regulatory (HMM E-Value=0.65)
          Length = 223

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +2

Query: 434 CTPPQVSTETGPRLQVSRNDRLPHGISSLSARA--DEPPYRSELDTVT 571
           C    +    GP   V    R+   IS   A A  DEPPY  ELD +T
Sbjct: 103 CPEDILRLHRGPTFSVLEQLRVTFDISREMALATSDEPPYYGELDIIT 150


>SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30)
          Length = 823

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 300 CRHLTS*YGQGAARDATFCRPRTRSSFSGVPNVARDGSITVNRHTVP 440
           C    S +   + + +  CRPR  SS S +PN+ R  S ++N    P
Sbjct: 621 CETADSNHRHASKQQSKQCRPRDDSSHSEIPNINRP-SASINTPITP 666


>SB_29370| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 579

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
 Frame = -1

Query: 623 VSII*TSIEAVAEGEVLR*PCPILNDTVVRQLW---------LIMTRSHVAVGHYEKLGA 471
           VS   T  +A+    +L   C  LN TV+R  W         +++  +   VG  ++  A
Sbjct: 150 VSASGTHEKAITMQSILVSLCLALNSTVIRLTWALSHFHVHGIVLGYAVSFVGWRDESIA 209

Query: 470 VDQFQLKLEEGYSV-PVHSYTSITCHIRYSRETAAGPWSAKSSISCRTL 327
            +         Y V  +H YT+    +    E   GP+S    ISC TL
Sbjct: 210 REHLSCSSRAWYDVRELHEYTTYNMSVLVFNEKGKGPYS--PPISCTTL 256


>SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)
          Length = 704

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 476 QVSRNDRLPHGISSLSARADEPPYRSEL 559
           ++SRND +   IS+ S RA+ PP + +L
Sbjct: 572 RMSRNDSIGSSISNSSNRANNPPQKRKL 599


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,632,129
Number of Sequences: 59808
Number of extensions: 543784
Number of successful extensions: 1199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)