Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0979
(698 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC032446-1|AAH32446.1| 767|Homo sapiens cold shock domain conta... 30 6.9
AY049788-1|AAL15445.1| 708|Homo sapiens NRAS-related protein pr... 30 6.9
AL096773-5|CAI18825.1| 798|Homo sapiens cold shock domain conta... 30 6.9
AL096773-4|CAI18826.1| 767|Homo sapiens cold shock domain conta... 30 6.9
AL050150-1|CAB43294.1| 369|Homo sapiens hypothetical protein pr... 30 6.9
AK022528-1|BAB14080.1| 767|Homo sapiens protein ( Homo sapiens ... 30 6.9
AK022516-1|BAB14073.1| 767|Homo sapiens protein ( Homo sapiens ... 30 6.9
AF070542-1|AAC28634.1| 467|Homo sapiens unknown protein. 30 6.9
AB020692-1|BAA74908.2| 826|Homo sapiens KIAA0885 protein protein. 30 6.9
>BC032446-1|AAH32446.1| 767|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 767
Score = 30.3 bits (65), Expect = 6.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 339 RDATFCRPRTRSSFSGVPNVARDGSITVNRHTVPL-LKFQLKLVHGS 476
++ATF P+T S G A DG I + V L + FQ K V GS
Sbjct: 403 KEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS 449
>AY049788-1|AAL15445.1| 708|Homo sapiens NRAS-related protein
protein.
Length = 708
Score = 30.3 bits (65), Expect = 6.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 339 RDATFCRPRTRSSFSGVPNVARDGSITVNRHTVPL-LKFQLKLVHGS 476
++ATF P+T S G A DG I + V L + FQ K V GS
Sbjct: 403 KEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS 449
>AL096773-5|CAI18825.1| 798|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 798
Score = 30.3 bits (65), Expect = 6.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 339 RDATFCRPRTRSSFSGVPNVARDGSITVNRHTVPL-LKFQLKLVHGS 476
++ATF P+T S G A DG I + V L + FQ K V GS
Sbjct: 434 KEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS 480
>AL096773-4|CAI18826.1| 767|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 767
Score = 30.3 bits (65), Expect = 6.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 339 RDATFCRPRTRSSFSGVPNVARDGSITVNRHTVPL-LKFQLKLVHGS 476
++ATF P+T S G A DG I + V L + FQ K V GS
Sbjct: 403 KEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS 449
>AL050150-1|CAB43294.1| 369|Homo sapiens hypothetical protein
protein.
Length = 369
Score = 30.3 bits (65), Expect = 6.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 339 RDATFCRPRTRSSFSGVPNVARDGSITVNRHTVPL-LKFQLKLVHGS 476
++ATF P+T S G A DG I + V L + FQ K V GS
Sbjct: 5 KEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS 51
>AK022528-1|BAB14080.1| 767|Homo sapiens protein ( Homo sapiens
cDNA FLJ12466 fis, clone NT2RM1000826, highly similar to
UNR PROTEIN. ).
Length = 767
Score = 30.3 bits (65), Expect = 6.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 339 RDATFCRPRTRSSFSGVPNVARDGSITVNRHTVPL-LKFQLKLVHGS 476
++ATF P+T S G A DG I + V L + FQ K V GS
Sbjct: 403 KEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS 449
>AK022516-1|BAB14073.1| 767|Homo sapiens protein ( Homo sapiens
cDNA FLJ12454 fis, clone NT2RM1000555, highly similar to
UNR PROTEIN. ).
Length = 767
Score = 30.3 bits (65), Expect = 6.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 339 RDATFCRPRTRSSFSGVPNVARDGSITVNRHTVPL-LKFQLKLVHGS 476
++ATF P+T S G A DG I + V L + FQ K V GS
Sbjct: 403 KEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS 449
>AF070542-1|AAC28634.1| 467|Homo sapiens unknown protein.
Length = 467
Score = 30.3 bits (65), Expect = 6.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 339 RDATFCRPRTRSSFSGVPNVARDGSITVNRHTVPL-LKFQLKLVHGS 476
++ATF P+T S G A DG I + V L + FQ K V GS
Sbjct: 403 KEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS 449
>AB020692-1|BAA74908.2| 826|Homo sapiens KIAA0885 protein protein.
Length = 826
Score = 30.3 bits (65), Expect = 6.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 339 RDATFCRPRTRSSFSGVPNVARDGSITVNRHTVPL-LKFQLKLVHGS 476
++ATF P+T S G A DG I + V L + FQ K V GS
Sbjct: 462 KEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS 508
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,851,629
Number of Sequences: 237096
Number of extensions: 2517124
Number of successful extensions: 9385
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9385
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -