Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0979
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06210.1 68415.m00684 phosphoprotein-related low similarity t...    29   3.9  
At2g34730.1 68415.m04265 myosin heavy chain-related low similari...    28   6.8  
At2g28220.1 68415.m03426 aspartyl protease family protein contai...    28   6.8  
At5g59070.1 68418.m07401 glycosyl transferase family 1 protein c...    27   9.0  
At4g01240.1 68417.m00163 hypothetical protein                          27   9.0  

>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
           phosphoprotein from Mus musculus GI:1236239; contains
           Pfam profile PF00515 TPR Domain
          Length = 1064

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -1

Query: 530 LWLIMTRSHVAVGHYEKLGAVDQFQLKLEEGYSVPVHSYTSITCHIRYSRETAAGPW 360
           LWLI+ R       Y K G ++QF+  LEEG S  +  Y +   + R +   A G +
Sbjct: 42  LWLIIARE------YFKQGKIEQFRQILEEGSSSDIDEYYADVKYERIAILNALGAY 92


>At2g34730.1 68415.m04265 myosin heavy chain-related low similarity
           to  SP|P14105 Myosin heavy chain, nonmuscle (Cellular
           myosin heavy chain) {Gallus gallus}
          Length = 825

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +2

Query: 2   KTVVTLFAIVLLIEVVGGQSMPKIKPESFQKNNRICQTLQE---DPYFEIDEVIGKPWRI 172
           K +V+L  +V    + G   +  +  E  QK N   + +Q    D   +I+EV GK    
Sbjct: 694 KQLVSLDLVVPPQLIKGFDILEGLIAEKTQKTNSRLKNMQSQLSDLSHQINEVKGKA--- 750

Query: 173 YYTWNMRFEKKCMDMTFKNATPKIVQRDGTTCTSIL 280
             T+  R EKKC D+    A   ++  +  T   +L
Sbjct: 751 -STYKQRLEKKCCDLKKAEAEVDLLGDEVETLLDLL 785


>At2g28220.1 68415.m03426 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 756

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -1

Query: 221 TSCPYTFFRTSCSTCNRSSMASLSLHRFRNTDLPVKSDIFYCFSG 87
           T+  Y+ F +S S     +M  LSL      DLP    I YCFSG
Sbjct: 526 TNLQYSGFASSSSGIVGLNMGPLSL--ISQMDLPYPGLISYCFSG 568


>At5g59070.1 68418.m07401 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 505

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 298 NAATLHLSMGKVRHEMLLFADQGPA--AVSLEYLMWHVME 411
           +A TLHL++    HE+ +F    P+     L+ LM+H+ E
Sbjct: 106 HALTLHLALANRGHELHVFTAASPSFPEYQLKNLMFHLSE 145


>At4g01240.1 68417.m00163 hypothetical protein 
          Length = 659

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 304 ATLHLSMGKVRHEMLLFADQGPAAVSLEYLMWHVM 408
           ATL LS+G+ R + +L    G  A  +E  +W  M
Sbjct: 75  ATLELSLGEARLQQVLVESAGHNASEVEDKVWETM 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,488,424
Number of Sequences: 28952
Number of extensions: 382244
Number of successful extensions: 969
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)