Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0977
         (289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    24   3.8  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    24   3.8  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    23   6.7  

>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 105 RSKQRLIFKSIKVFTSAFL*NWYEWF 28
           R + +L+     +FTSAF+ NW + F
Sbjct: 91  RRESKLVSHVCSLFTSAFVFNWPKHF 116


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 86  YLKVSKFSLQRFCKIGMNGFFSLFMFCH 3
           YL ++K  + +FCK   + +   F+ CH
Sbjct: 26  YLTLNKLFIDKFCKTQESTYPIHFVHCH 53


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 261 LTRWLSSTTPASIC 220
           LTR+LS+ TP ++C
Sbjct: 189 LTRFLSTLTPGTVC 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 855,982
Number of Sequences: 5004
Number of extensions: 10287
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)