Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0977
         (289 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           28   1.4  
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588...    27   3.2  
04_04_0895 - 29168107-29168229,29168617-29170068                       26   4.2  
06_01_0147 + 1111554-1112189                                           25   9.8  

>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 203 SSCSTCKW*CTESRGRSMGRSKNRR 129
           +SC  CK  C  S GRS  R++ RR
Sbjct: 252 TSCIFCKSFCRSSGGRSRARARERR 276


>01_03_0271 +
           14454681-14456949,14457222-14457476,14458800-14458864,
           14459053-14459171,14459270-14459324
          Length = 920

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 282 HKTSLLHLTRWLSSTTP 232
           +K +LL L+RWLS +TP
Sbjct: 20  NKVALLKLSRWLSGSTP 36


>04_04_0895 - 29168107-29168229,29168617-29170068
          Length = 524

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 254 DGCHRRHPRRYVSEFNISSC 195
           DGC RR+P  Y S+  I +C
Sbjct: 259 DGCIRRYPALYGSDDRIQAC 278


>06_01_0147 + 1111554-1112189
          Length = 211

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 186 TRAARRYVKFGNISTRVSSMTTIVLSAIV 272
           +RAA+RY+  G  +T V+++   ++SA++
Sbjct: 13  SRAAKRYILLGLAATLVAAVVAGLVSAVL 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,047,506
Number of Sequences: 37544
Number of extensions: 58982
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)