Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0975
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    31   0.21 
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    28   1.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.0  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    27   2.0  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    27   2.6  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    27   2.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   3.4  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   4.5  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   6.0  
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    26   6.0  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    26   6.0  
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    25   7.9  
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    25   7.9  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   7.9  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    25   7.9  

>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +2

Query: 437 EIYRKRGGGFENANQRIERGIGGNKMTLRE-KNEQQQEYRLKYLQAQQEVEELKRQLDVI 613
           +++ +R    ENA ++++R        + E K+ ++ +Y  +  Q Q  ++EL  +LDV 
Sbjct: 245 KVFTERIRFLENALEKVQREKDSLSTEMEEDKSNKEVDYEYEIRQLQNRLDELSEELDVA 304

Query: 614 EFDNKQVSDQI 646
           +    +  D+I
Sbjct: 305 QDLLTEKEDEI 315


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 141 SGYFHLDFFYFAFHIPQLFLQ*NGSS 64
           S +F+L++  FA+++PQ F +  G +
Sbjct: 365 SSFFYLNYMLFAYYVPQYFQRIRGDN 390


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/38 (26%), Positives = 26/38 (68%)
 Frame = +2

Query: 518 LREKNEQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQ 631
           + E+N+++QE  LK ++ +++  + K+QL + + + +Q
Sbjct: 576 IEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQ 613


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 512 MTLREKNEQQQEYRLKYLQAQQEVEE--LKRQLDVIEFDNKQVS 637
           M L+++ +   E   KYL  QQE EE  +++Q  ++  + ++V+
Sbjct: 189 MRLKKQEQLDDEIAKKYLLGQQEAEEPLVQQQTSIVNPEKEEVT 232


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
 Frame = +1

Query: 79  LQKQLGDMEGEVKEIQMEIAAIKRD------RLDVMTKKQMNVFTPESEYLESTDSGF 234
           +Q ++  M+GE+ E+++E+  +KR+      R+D++ +K    F    +   S D  F
Sbjct: 140 VQNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRF 197


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
 Frame = +1

Query: 79  LQKQLGDMEGEVKEIQMEIAAIKRD------RLDVMTKKQMNVFTPESEYLESTDSGF 234
           +Q ++  M+GE+ E+++E+  +KR+      R+D++ +K    F    +   S D  F
Sbjct: 140 VQNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRF 197


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 258  PSFIYRFTKATVCTFKIFRFRRKNIHLFL 172
            PSF+ RF+      + +F  R+++IH F+
Sbjct: 970  PSFLRRFSSMITPAWLLFLLRQQDIHYFI 998


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = +2

Query: 491  RGIGGNKMTLREKNEQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIXKVK 670
            R +   +  L+EK E++++ + +  + Q+EV E ++       D+  +SD  + +  K K
Sbjct: 884  RRLAEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEEKQSGKKK 943


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 424 IKNIGNIPKKRWRL 465
           ++NI +IPK RW+L
Sbjct: 292 VRNIASIPKSRWKL 305


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 462 PPPLFRYISDILYVQEFL-YDIFR*VSIPNLSTSSHIFHAEFFLLQ 328
           PPP ++ + D+  VQE +  D++R +    LS      H ++F  Q
Sbjct: 105 PPPSYQELEDVYIVQELMETDLYRVIRSQPLSDD----HCQYFTYQ 146


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 494 GIGGNKMTLREKNEQQQEYRLKYLQAQQEVEELKRQL 604
           G+ G  ++  ++  ++   R   L  Q+E+EE +RQL
Sbjct: 335 GLDGKNLSQHDQVLREDRLRAIELSVQKEIEEKRRQL 371


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/72 (22%), Positives = 29/72 (40%)
 Frame = +2

Query: 482 RIERGIGGNKMTLREKNEQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIX 661
           R+E+     K  L+    +  E    Y+  ++ + ELK+     +    QV D   ++  
Sbjct: 20  RVEKKHSNEKKYLKSVKGKNNENENSYIVDKKRMNELKKFAKENDIPESQVLDAYGVDAS 79

Query: 662 KVKMPFPRETSG 697
           K+      ET G
Sbjct: 80  KLTRKTNLETLG 91


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
 Frame = +2

Query: 362 DEVERFGIETQRNMS*RNSWT*RISEIYRKRGGGFENANQRIERGIGGNKMTLREKNEQQ 541
           DE+ER G++ + N         +IS  +       ++ +  ++R +   K   ++   + 
Sbjct: 21  DELER-GVQDESNTISLAGIQGQISASFLSLSRSIDDYDSMVQRELVPAKK--KKATIRI 77

Query: 542 QEYRLKYLQAQQEVEELKRQL-DVIEFDNKQ 631
           QE+R K++Q  ++ +ELK  + D+ +  N++
Sbjct: 78  QEFRQKHVQLLEKFDELKAHVRDIAQAKNRK 108


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 268 DLSSELYLQIHQSHCLYFQDI 206
           D+  E YL+I  + CL+ QD+
Sbjct: 92  DMPKENYLKIFSNQCLFTQDV 112


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 512 MTLREKNEQQQEYRLKYLQAQQEVEELKRQL 604
           M L  KN QQQ++ +  + A  ++ ELK ++
Sbjct: 1   MNLTFKNLQQQKFVISDVSADTKISELKEKI 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,704
Number of Sequences: 5004
Number of extensions: 49077
Number of successful extensions: 220
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)