Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0975
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0398 - 3515439-3515573,3515965-3516516 34 0.12
05_07_0172 - 28136987-28137124,28137458-28138009 33 0.29
02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087 32 0.38
04_01_0301 + 4016588-4016627,4016715-4018837 32 0.50
08_01_0242 - 2007601-2007677,2007792-2007843,2008117-2008188,200... 31 0.67
06_02_0367 - 15222703-15223088,15224761-15224826,15226748-15227048 30 1.5
11_06_0185 + 21018045-21022307 30 2.0
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 29 2.7
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 29 4.7
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 29 4.7
06_01_0459 + 3272479-3272817,3272927-3272992,3273104-3273169,327... 28 8.2
>08_01_0398 - 3515439-3515573,3515965-3516516
Length = 228
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Frame = +2
Query: 518 LREK---NEQQQEYRLKYLQAQQEVEELKRQLD--VIEFDNKQVSDQIQ 649
LREK NE Q E + + LQAQ ++E+LK+QL+ IE +K+ + I+
Sbjct: 86 LREKESFNELQDEIQRQILQAQTDIEDLKKQLEQSKIERQHKEECEAIR 134
>05_07_0172 - 28136987-28137124,28137458-28138009
Length = 229
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 3/33 (9%)
Frame = +2
Query: 518 LREK---NEQQQEYRLKYLQAQQEVEELKRQLD 607
LREK NE Q E + + LQAQ ++EELK++L+
Sbjct: 86 LREKESFNELQDEIQRQILQAQTDIEELKKKLE 118
>02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087
Length = 790
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 509 KMTLREKNEQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSD 640
K TL +++ + Q ++KY ++ L+RQL + +NKQ+SD
Sbjct: 259 KQTLAKRDAELQFVQMKYADEACKLSVLQRQLSELTEENKQLSD 302
>04_01_0301 + 4016588-4016627,4016715-4018837
Length = 720
Score = 31.9 bits (69), Expect = 0.50
Identities = 11/40 (27%), Positives = 28/40 (70%)
Frame = +1
Query: 37 IQSEDVEITGGSILLQKQLGDMEGEVKEIQMEIAAIKRDR 156
+Q+++ E+ + ++++ G E EVK++QME++A+ ++
Sbjct: 207 VQAKNDELLSNVLAIKEKYGQSEAEVKKLQMELSALVMEK 246
>08_01_0242 -
2007601-2007677,2007792-2007843,2008117-2008188,
2008710-2009219
Length = 236
Score = 31.5 bits (68), Expect = 0.67
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +2
Query: 530 NEQQQEYRLKYLQAQQEV--EELKRQLDVIEFDNKQV 634
+E+ Q R+K LQA+ EV EL++QL+ E + KQV
Sbjct: 182 SEEDQLKRIKELQAENEVVGTELQKQLEAAELELKQV 218
>06_02_0367 - 15222703-15223088,15224761-15224826,15226748-15227048
Length = 250
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 509 KMTLREKNEQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQ 649
K L+EK + ++ K L AQ++ E L + + + DNK + DQ++
Sbjct: 189 KRQLKEKANEAKDAEAKALAAQKQSEGLMIEYNHLVEDNKHLHDQLE 235
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/67 (23%), Positives = 34/67 (50%)
Frame = +2
Query: 446 RKRGGGFENANQRIERGIGGNKMTLREKNEQQQEYRLKYLQAQQEVEELKRQLDVIEFDN 625
R+ GGG +++ ERG G + ++ ++ E R + Q +QE E K + + + +
Sbjct: 437 RQGGGGERKEDEKDERGDGEEEGKEERRDMEKGEERKEQQQEEQEKEGRKEEQNEVRKET 496
Query: 626 KQVSDQI 646
+ +Q+
Sbjct: 497 EGRKEQV 503
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/58 (18%), Positives = 30/58 (51%)
Frame = +2
Query: 479 QRIERGIGGNKMTLREKNEQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQI 652
++I++ + G L E + Q + + KYL Q+E++ + Q++ + + + ++
Sbjct: 457 EKIKKAMEGQASALHEMSAQLRVAQEKYLDKQEEIDRARAQVEELNVSLQNTKESYEV 514
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 96 GYGRRSKRNPDGNSRYKT*PIRCDDEETDECFYAGIGIS 212
GYG S+++P + R K +RC +E + IG++
Sbjct: 639 GYGDMSRKSPVSDKRAKVEALRCRADEEKSKYEKSIGVT 677
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 521 REKNEQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQ 643
R + Q+++ K + + E+EE KRQ D + + K V +Q
Sbjct: 1458 RNEKMQRKDMEEKIARQRMEIEETKRQRDELYHELKDVKEQ 1498
>06_01_0459 +
3272479-3272817,3272927-3272992,3273104-3273169,
3274220-3274537,3274595-3274701,3274816-3274867
Length = 315
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 488 ERGIGGNKMTLREKNEQQQEYRLKYLQAQQEVEELKRQL 604
+RG GG + +Q+Q R + Q ++E EE++RQ+
Sbjct: 4 QRGRGGFDELVLLHQQQEQRRRREQQQEEEEEEEVRRQM 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,740,583
Number of Sequences: 37544
Number of extensions: 287720
Number of successful extensions: 981
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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