Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0970
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   5.4  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   7.1  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    25   7.1  

>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 370 FGAPFPLPLPCQKSRVDILELVLPLFDPFAPYSISL 263
           F   F  PLP +++R+ ILE+    F P  P S  L
Sbjct: 536 FDREFYFPLPNKQARMKILEINSLHFSPKIPESYLL 571


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 365 TERPQLDPRSGLARQGP 415
           T  P+LDP++GL+R  P
Sbjct: 379 TATPRLDPKTGLSRYRP 395


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 377 QLDPRSGLARQGPRR-LSR*VPRL 445
           QLDPR+ L  Q PRR LSR   RL
Sbjct: 205 QLDPRTMLQLQWPRRQLSRLCKRL 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,500,210
Number of Sequences: 5004
Number of extensions: 24759
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)