Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0970
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0391 + 2838471-2838794,2838892-2839028,2841155-2841631,284... 29 1.7
10_07_0125 - 13096520-13097200,13098209-13098898 28 3.0
03_02_0846 + 11712530-11712740,11713974-11714055,11714127-117142... 28 3.0
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 28 4.0
12_01_0536 - 4212206-4212369,4212476-4212629,4212713-4212811,421... 27 5.3
12_02_1187 - 26793455-26793496,26793599-26793717,26793813-267939... 27 7.0
12_01_0537 - 4215833-4216005,4216168-4216366,4216399-4216497,421... 27 7.0
08_01_0047 - 328895-329404,329492-329821,330253-330626,330712-33... 27 9.2
04_03_0801 - 19828175-19828770,19828913-19828994 27 9.2
02_05_0584 - 30135768-30135790,30136104-30136866 27 9.2
>02_01_0391 +
2838471-2838794,2838892-2839028,2841155-2841631,
2841719-2841999,2843009-2843051,2844094-2844148,
2845771-2845824,2846282-2846314,2846574-2846621,
2846885-2846950,2847286-2847426
Length = 552
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 364 APFPLPLPCQKSRVDILELVLPLFDPFAPYSISLPKYCLPMEHHR 230
+P PLPLP + I +F PF Y + + + LP+ HH+
Sbjct: 73 SPSPLPLPRATKQPFI-----GIFSPFKSYPLQVIRESLPLAHHQ 112
>10_07_0125 - 13096520-13097200,13098209-13098898
Length = 456
Score = 28.3 bits (60), Expect = 3.0
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Frame = -2
Query: 412 PLTSESGAWIQLRPFGAPFPLPLPCQKSRV-----DILELVLPLFDPFAPYSISLPK 257
PL+ W+ L P F P P V D LE VLP F PFA + P+
Sbjct: 32 PLSPFDAYWVALPPVRRVFLFPSPPPFGDVVRALRDSLEAVLPAFYPFAGALVYSPE 88
>03_02_0846 +
11712530-11712740,11713974-11714055,11714127-11714226,
11714311-11714406,11714492-11714542,11714685-11714750,
11715413-11715514,11716099-11716167,11716251-11716334,
11716531-11716626,11717216-11717268,11718808-11718945,
11719003-11719435
Length = 526
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 258 LGSEIEYGANGSKSGKTNSRMSTLLFWQGKGKGNG 362
+G+ YGAN +S N M T +FW G + +G
Sbjct: 190 IGNNAFYGANYIQSVTPNLSMGTEIFWLGHQRKSG 224
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 373 PFGAPFPLPLPCQKSRVDILELVLPLFDPFAPYS 272
P P P P PC SR D + + DPF ++
Sbjct: 62 PDAPPPPPPHPCDVSRADFAPYLAAVADPFGRFA 95
>12_01_0536 -
4212206-4212369,4212476-4212629,4212713-4212811,
4212917-4213124,4214437-4214639,4214728-4214801,
4214968-4215043,4215256-4215360
Length = 360
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 306 TNSRMSTLLFWQGKGKGNGAPNGRNWIHAPDSLVKGHV 419
T S+ L+ G GK G P+GR WI P KG +
Sbjct: 119 TLSKEDVLVAIDG-GKSEGGPSGRYWILDPIDGTKGFI 155
>12_02_1187 -
26793455-26793496,26793599-26793717,26793813-26793939,
26794382-26794520,26794565-26794833,26794923-26795056,
26795630-26795750
Length = 316
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -1
Query: 446 AAEELNEIG---DVALDERVRSVDPVAAVRCPVPFALTLPEEQGRHSGVSFA 300
AAE L IG ++L E +VDP V+ A+ EEQ SGV A
Sbjct: 86 AAEALGAIGLEKSISLLEESLAVDPAVEVQETCELAIRRIEEQKNTSGVESA 137
>12_01_0537 -
4215833-4216005,4216168-4216366,4216399-4216497,
4216599-4216809,4217264-4217466,4217557-4217633,
4217874-4217949,4218342-4218425
Length = 373
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 348 GKGNGAPNGRNWIHAPDSLVKG 413
GK G P+GR+W+ P KG
Sbjct: 126 GKSEGGPSGRHWVLDPIDGTKG 147
>08_01_0047 -
328895-329404,329492-329821,330253-330626,330712-330937,
331026-331475
Length = 629
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 351 KGNGAPNGRNWIHAPDSLVKGHVAYLV 431
KG G N +W +A S + H+A LV
Sbjct: 355 KGKGGSNHASWTYAMSSFMLSHLANLV 381
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 373 PFGAPFPLPLPCQKSRVD 320
PF P P P+PC K+ D
Sbjct: 128 PFPYPVPYPVPCNKTATD 145
>02_05_0584 - 30135768-30135790,30136104-30136866
Length = 261
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -2
Query: 373 PFGAPFPLPLPCQKSRVDILELVLPLFD--PFAPY 275
PF PFPLP P ++ E + PL P A Y
Sbjct: 151 PFPLPFPLPQPSSPAQPQPKECMTPLMSVMPCADY 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,557,222
Number of Sequences: 37544
Number of extensions: 190661
Number of successful extensions: 661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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