Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0970
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death abno...    46   2e-05
AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate ada...    46   2e-05
U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z73898-4|CAA98068.2|  453|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death
           abnormality protein 6 protein.
          Length = 492

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +3

Query: 372 GRNWIHAPDSLVKGHVAYLVKFLGC 446
           GR WIH PD L+ GHV Y+ +FLGC
Sbjct: 44  GRTWIHPPDYLINGHVEYVARFLGC 68


>AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate
           adaptor protein CED-6 protein.
          Length = 492

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +3

Query: 372 GRNWIHAPDSLVKGHVAYLVKFLGC 446
           GR WIH PD L+ GHV Y+ +FLGC
Sbjct: 44  GRTWIHPPDYLINGHVEYVARFLGC 68


>U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical
          protein F19C7.3 protein.
          Length = 310

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 12 HHH*NNINNSWPSLVQR 62
          +HH  NI N WPSLVQR
Sbjct: 15 NHHEYNIKNPWPSLVQR 31


>Z73898-4|CAA98068.2|  453|Caenorhabditis elegans Hypothetical
           protein ZK822.4 protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 279 GANGSKSGKTNSRMSTLLFWQGKGKGNGAPN 371
           G NG+  G   S        QG G GNGA N
Sbjct: 317 GQNGNSGGSGFSSFFNNFNGQGNGNGNGAQN 347


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 376 RPFGAPFPLPLPCQKSRVDILELVLPLFDPFAPYSISLPKYCLPMEHHRP 227
           +P   PFP P+P  K + +     +P   P  P     PK   PM  H+P
Sbjct: 11  KPKSEPFPKPMPKSKPKSEPFPSPMPFPKPM-PKPKPKPK---PMPKHKP 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,465,146
Number of Sequences: 27780
Number of extensions: 145591
Number of successful extensions: 419
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)