Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0970
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   2.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   2.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   2.7  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 371 RPQLDPRSGLARQ 409
           RP L+PR GLA Q
Sbjct: 169 RPPLNPRFGLAHQ 181


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 371 RPQLDPRSGLARQ 409
           RP L+PR GLA Q
Sbjct: 179 RPPLNPRFGLAHQ 191


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 292 DPFAPYSISLPKYCLPMEHHRP 227
           DP+  Y+IS PKY L ++   P
Sbjct: 324 DPYV-YAISHPKYRLELQKRLP 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,799
Number of Sequences: 438
Number of extensions: 1808
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)