Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0967
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    29   0.64 
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   3.4  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   6.0  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   6.0  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   6.0  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 38  VQTTVKKIHAYSHHLFALRTL 100
           ++  VKKIH ++H +F LRTL
Sbjct: 63  LKVAVKKIHPFNHPVFCLRTL 83


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = +2

Query: 17  RTVLWYVVQTTV-----KKIHAYSHHLFAL 91
           R + WY + TT+     + I+AY HHLF +
Sbjct: 109 RFINWYFLMTTLYYAYGESIYAYFHHLFIM 138


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 67  IQPPLVCPKNTEHRARHAGKCACCPACVTLLGEG 168
           + PPL  PK+  HR   AG+       + LL +G
Sbjct: 334 LDPPLD-PKSFSHRCGRAGRAGRAGVAIVLLNDG 366


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = -1

Query: 608 TLNFFFITNKSFLINLSNPSLQICHNY*RLMRIYNYTRRVTYIVPIS*QGYLYNTYYFIS 429
           T  +F I + SFL+ +S     +  +Y  L ++Y+Y    ++IV ++       +     
Sbjct: 118 TCAYFVIFSISFLLGISGTGPSLNASYKSLCKLYSYEN--SFIVVLN--SIFVVSSCIGP 173

Query: 428 FLFGLLKIHIF*FQISIFT-TVHIIINFI 345
           FL  +L + +   Q+ + + T+H  INF+
Sbjct: 174 FLGSILLLRVSLLQLYLISWTIH-FINFV 201


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 593 FITNKSFLINLSNPSLQICHNY*RLMRIYNYTRRV 489
           F+  KSF +NL +P++Q  H   ++       RR+
Sbjct: 460 FLMGKSFDLNLRDPAVQALHTKYKMFPYIEKRRRI 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,605
Number of Sequences: 5004
Number of extensions: 58811
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)