Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0965
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...   102   3e-23
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    39   5e-04
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    31   0.13 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    29   0.68 
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    28   0.90 
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   2.1  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    25   8.4  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   8.4  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   8.4  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   8.4  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score =  102 bits (245), Expect = 3e-23
 Identities = 59/118 (50%), Positives = 79/118 (66%), Gaps = 4/118 (3%)
 Frame = +1

Query: 256 QVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDI-NXADSVHLHPQGYQ 432
           QVYEETSG+TVGDPV RTGKPLSVELGPG+  +I+DGIQRPLK I + + S+++ P+G  
Sbjct: 72  QVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYI-PRGIN 130

Query: 433 RAFPXXXXXXXI*PIKX*GRVPHH--R*DLYGIVHENTLVK-HRMLVPXKAKGTVTYI 597
                        P K   R+  H    D++G V EN+L   H++++P +A+GTVTYI
Sbjct: 131 TESLNREHKWDFTPNKD-LRIGDHVSGGDVFGSVFENSLFNDHKIMLPPRARGTVTYI 187



 Score = 91.9 bits (218), Expect = 6e-20
 Identities = 55/149 (36%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
 Frame = +2

Query: 68  SKGGLRTIAN-EENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIXLEGD 244
           +K  +R++ N +E+E R+G +F+VSGPVV A  M G +MYELVRVG+ ELVGE+I +  D
Sbjct: 8   AKKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQD 67

Query: 245 MXTTRYTKKLQV*L*VIQYSVLESLCQ*NLVPVSWVPSLTVFSVPSRTSTXLTQSIYIPK 424
             T +  ++                    L P            P +     +QSIYIP+
Sbjct: 68  KCTIQVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPR 127

Query: 425 GINVPSLAREVDWEFNP-LXVKVGSHITG 508
           GIN  SL RE  W+F P   +++G H++G
Sbjct: 128 GINTESLNREHKWDFTPNKDLRIGDHVSG 156


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 271 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINXADSVHLHP 420
           T G+  G  V+ TG P+S+ +GPG LG I + I  P+ +     +V   P
Sbjct: 113 TEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSP 162


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 402 LSPSTSP-RVSTCLPWPGRLTGNLTH*XLRSGPTSP 506
           L PSTS  RV   LPW G++    T   L S PT+P
Sbjct: 333 LDPSTSDNRVMFFLPWQGKVIAGTTDKPLSSVPTNP 368


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 368 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPE 273
           IPS + P    P  T  GFP R    PT+ P+
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPD 399


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 226 NLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGEDISEPLLILLIGDRP 83
           +L  E    DTD+ VHS+S    GS+  S    D  E  +I ++G  P
Sbjct: 183 SLVPEHYFDDTDKSVHSKSSS--GSNSLSEASNDDLESSIIQIVGGLP 228


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 177 ADPDIFSAVTTGPDTAKTYPN 115
           AD  +F AV   PDTAK YPN
Sbjct: 33  ADAVVFKAVGVAPDTAK-YPN 52


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 489 TLTFNGLNSQSTSLAREGTLI 427
           T  FNGL +  TSLA + TL+
Sbjct: 24  TFGFNGLGTSRTSLAPQRTLV 44


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -2

Query: 564 DQHPVLDQSVLVYNTIQISPV 502
           +Q P+ D+S+++  +I+ISPV
Sbjct: 51  EQEPLFDESIVLGYSIKISPV 71


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 464 EFNPLXVKVGSHITGEICMVLYTRT 538
           +  P+   + + +TGEIC  +++RT
Sbjct: 568 QIGPVRCTLQNRVTGEICNTVFSRT 592


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 168 DIFSAVTTGPDTAKTYPNLSSFSSLAIVLK 79
           D    +  GP   +T+PN+ S +SLA+  K
Sbjct: 244 DTHLPIKMGPLDVQTHPNIRSIASLALSRK 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,039
Number of Sequences: 5004
Number of extensions: 52561
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)