Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0965
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 45   5e-05
SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)                 29   3.8  
SB_47923| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)                 28   6.6  
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         28   6.6  
SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3)             27   8.7  

>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 17/29 (58%), Positives = 23/29 (79%)
 Frame = +1

Query: 511 DLYGIVHENTLVKHRMLVPXKAKGTVTYI 597
           D+YG V ENT +KH +++  KAKGT+TYI
Sbjct: 9   DIYGYVQENTFIKHHIMLHPKAKGTITYI 37


>SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)
          Length = 1193

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 373  RPLKDINXADSVHLHPQGYQRAFP 444
            +PLK++N  ++V + P G++R  P
Sbjct: 1062 KPLKEVNPGETVRMKPPGHERWIP 1085


>SB_47923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 298 LDHLQLHLKFLRIPGG-GHVTFKXDNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGEDI 122
           +DHL +HL      GG  H T    +L D F+     +  H +   L    D  R  EDI
Sbjct: 226 MDHL-IHLGSFNSNGGFWHTTLIEKHLIDYFVPFLPLERAHIKQCALVDLQDKGRKREDI 284

Query: 121 SEPLLILL 98
           ++ LL ++
Sbjct: 285 TDDLLNMI 292


>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
          Length = 1016

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 247 HVTFKXDNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGEDI 122
           H+T    NLTD+  +T  D  + S   HL  SDD    G+D+
Sbjct: 484 HLTSDDGNLTDDVHLTSNDVYLTSDGVHL-TSDDVHLTGDDV 524


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 289 GDPVLRTGKPLSVELGPGILGSIFDGIQRPL 381
           GD V RTG  + V +G  +LG + D +  P+
Sbjct: 24  GDIVKRTGAIVDVPVGEELLGRVVDALGNPI 54


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 365 PSKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSS 264
           P+   P IP  S    G+P  +TG PT  P  SS
Sbjct: 315 PTTGIPVIPQSSVLTPGYPSANTGYPTAIPGYSS 348


>SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3)
          Length = 586

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 419 GCRWTESAXLMSLRGR*IP 363
           GC WT ++ LM++RG  IP
Sbjct: 244 GCSWTRNSVLMAVRGPEIP 262


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,725,161
Number of Sequences: 59808
Number of extensions: 420797
Number of successful extensions: 955
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)