Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0965
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...   115   3e-26
U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...    36   0.029
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    31   0.47 
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    31   0.47 
Z81537-3|CAB04374.1|  348|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z70035-12|CAB76726.1|  150|Caenorhabditis elegans Hypothetical p...    27   7.7  

>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score =  115 bits (276), Expect = 3e-26
 Identities = 64/118 (54%), Positives = 81/118 (68%), Gaps = 4/118 (3%)
 Frame = +1

Query: 256 QVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDI-NXADSVHLHPQGYQ 432
           QVYEETSGVT+GDPVLRTGKPLSVELGPGI+GSIFDGIQRPLKDI +   S+++ P+G  
Sbjct: 54  QVYEETSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDIADITQSIYI-PKGVS 112

Query: 433 -RAFPXXXXXXXI*PIKX*GRVPHH--R*DLYGIVHENTLVKHRMLVPXKAKGTVTYI 597
             A         +  +    RV  H    D+ G V EN L+KH++L+P  A GT+T++
Sbjct: 113 TNALSREARWDFV--VSKDLRVGGHVTGGDIIGTVDENLLIKHKILLPPSACGTITFV 168



 Score =  103 bits (247), Expect = 1e-22
 Identities = 64/138 (46%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
 Frame = +2

Query: 107 EERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIXLEGDMXTTR-YTKKLQV* 283
           E  +G+V+ VSGPVVTAEKM+GSAMYELVRVG+ ELVGEII LEGD  T + Y +   V 
Sbjct: 4   ESSYGFVYGVSGPVVTAEKMAGSAMYELVRVGHQELVGEIIRLEGDYATIQVYEETSGV- 62

Query: 284 L*VIQYSVLES--LCQ*NLVPVSWVPSLTVFSVPSRTSTXLTQSIYIPKGINVPSLAREV 457
              I   VL +       L P            P +    +TQSIYIPKG++  +L+RE 
Sbjct: 63  --TIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDIADITQSIYIPKGVSTNALSREA 120

Query: 458 DWEF-NPLXVKVGSHITG 508
            W+F     ++VG H+TG
Sbjct: 121 RWDFVVSKDLRVGGHVTG 138


>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 271 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKD 387
           T G+  G PV  TG P+ + +GP  LG I + I  P+ +
Sbjct: 125 TEGLVRGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDE 163


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 259 VYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 381
           V+     +  GD V RTG  + V +G G+LG + D +  P+
Sbjct: 76  VFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 116


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 259 VYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 381
           V+     +  GD V RTG  + V +G G+LG + D +  P+
Sbjct: 103 VFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 143


>Z81537-3|CAB04374.1|  348|Caenorhabditis elegans Hypothetical
           protein F41D3.3 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/64 (20%), Positives = 29/64 (45%)
 Frame = +2

Query: 89  IANEENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIXLEGDMXTTRYTK 268
           + NE+ +  F   F  S PV+ A  ++     +++ +G  +L+   +     +   R+  
Sbjct: 98  LLNEDRDVEFVRGFTTSSPVLKASPVASEDFSKILNIGSRDLLSYYVKQVESVEKQRFKN 157

Query: 269 KLQV 280
            LQ+
Sbjct: 158 ALQI 161


>Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical
           protein F28B1.3 protein.
          Length = 802

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 265 RIPGGGHVTFKXDNLTDEFIVTDTDQLVHSRSGH 164
           R+   G + +  DN T EF+  DTD  V     H
Sbjct: 287 RVSTDGRLKYLIDNCTSEFVCGDTDTFVVFNMNH 320


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
           protein F25C8.3b protein.
          Length = 3175

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 561 QHPVLDQSVLVYNTIQISPVMWDPTLTFNGLNSQSTSLAREGTLIPLGM 415
           QHPVL+ S+ +  T   S V     LT       +TS   + T+IPL M
Sbjct: 429 QHPVLESSMFLSTTSSASDVP-PFVLTRASTAEDTTSSCSQQTVIPLAM 476


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
           protein F25C8.3a protein.
          Length = 3184

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 561 QHPVLDQSVLVYNTIQISPVMWDPTLTFNGLNSQSTSLAREGTLIPLGM 415
           QHPVL+ S+ +  T   S V     LT       +TS   + T+IPL M
Sbjct: 429 QHPVLESSMFLSTTSSASDVP-PFVLTRASTAEDTTSSCSQQTVIPLAM 476


>Z70035-12|CAB76726.1|  150|Caenorhabditis elegans Hypothetical
           protein R09D1.14 protein.
          Length = 150

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +2

Query: 104 NEERFGYVFAVSGPVVTAEKMSG--SAMYELVRVGYNELVGEIIXLEGDMXTTRYTKKLQ 277
           N+   GY FA    V+T++++S    A++  V +  +   G+ + ++GD+   R+T  ++
Sbjct: 42  NKRIIGYYFATQTSVITSDQVSNLTHAVFAFVNITSD---GQ-LQIDGDLAKNRFTNLIE 97

Query: 278 V 280
           +
Sbjct: 98  I 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,270,689
Number of Sequences: 27780
Number of extensions: 304235
Number of successful extensions: 741
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)