Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0965
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 441 PWPGRLTGNLTH*XLRSGPTSPVRFVWYCTREHS 542
           PW  +L   +    +  GP +P  F   C  EHS
Sbjct: 397 PWTKKLEFVVGQHRILKGPANPDIFRVSCATEHS 430


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 441 PWPGRLTGNLTH*XLRSGPTSPVRFVWYCTREHS 542
           PW  +L   +    +  GP +P  F   C  EHS
Sbjct: 103 PWTKKLEFVVGQHRILKGPANPDIFRVSCATEHS 136


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 177 ADPDIFSAVTTGPDTAKTYPNLSS 106
           A+P    A TT P TA    +LS+
Sbjct: 22  ANPGTIQACTTSPATASLESSLSA 45


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 122 YVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIXLEGDMXT 253
           Y+F   G V  A        YE+ R    +L+ EI+  E D  T
Sbjct: 407 YLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGT 450


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +2

Query: 98  EENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIXLEGDMXTTRYTKKL 274
           EEN +    V      V     M G+A+YE V   +   +  I    G++ T  +T  L
Sbjct: 375 EENNKIDSRVTRFVVAVGATVNMDGTALYEAVAAIFIAQMNGISLGIGEVITVSFTATL 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,942
Number of Sequences: 438
Number of extensions: 3824
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)