Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0965
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 101 4e-22
At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) iden... 28 4.1
At2g28380.1 68415.m03449 double-stranded RNA-binding domain (DsR... 28 5.4
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 27 7.2
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 27 7.2
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 27 7.2
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 27 7.2
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 27 7.2
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 27 7.2
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 27 7.2
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 27 9.5
At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger) fa... 27 9.5
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 101 bits (242), Expect = 4e-22
Identities = 58/114 (50%), Positives = 66/114 (57%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINXADSVHLHPQGYQR 435
QVYEET+G+TV DPVLRT KPLSVELGPGILG+IFDGIQRPLK I P+G
Sbjct: 68 QVYEETAGLTVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIARISGDVYIPRGVSV 127
Query: 436 AFPXXXXXXXI*PIKX*GRVPHHR*DLYGIVHENTLVKHRMLVPXKAKGTVTYI 597
P K DLY V ENTL+ H + +P A G +TYI
Sbjct: 128 PALDKDCLWEFQPNKFVEGDTITGGDLYATVFENTLMNHLVALPPDAMGKITYI 181
Score = 97.9 bits (233), Expect = 4e-21
Identities = 62/160 (38%), Positives = 89/160 (55%), Gaps = 4/160 (2%)
Frame = +2
Query: 74 GGLRTIANEENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIXLEGDMXT 253
G L T ++E E +GYV VSGPVV A+ M+G+AMYELVRVG++ L+GEII LEGD T
Sbjct: 7 GKLTTFEDDEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSAT 66
Query: 254 TRY---TKKLQV*L*VIQYSVLESLCQ*NLVPVSWVPSLTVFSVPSRTSTXLTQSIYIPK 424
+ T L V V++ S+ L P P +T ++ +YIP+
Sbjct: 67 IQVYEETAGLTVNDPVLRTHKPLSV---ELGPGILGNIFDGIQRPLKTIARISGDVYIPR 123
Query: 425 GINVPSLAREVDWEFNPLXVKVGSHIT-GEICMVLYTRTL 541
G++VP+L ++ WEF P G IT G++ ++ TL
Sbjct: 124 GVSVPALDKDCLWEFQPNKFVEGDTITGGDLYATVFENTL 163
>At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) identical
to peroxisomal ABC transporter PXA1 GI:15320529 from
[Arabidopsis thaliana]; contains Pfam profile PF00005:
ABC transporter;
Length = 1337
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 346 RYRDQVLLTKAFQYGVLDHLQLHLKFLRIPGGGHVTFKXDNLTD 215
RY V+ +G D L+LH KFL + GG + F+ D D
Sbjct: 1035 RYLASVVSQSFMAFG--DILELHKKFLELSGGINRIFELDEFLD 1076
>At2g28380.1 68415.m03449 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 434
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 314 SLCQ*NLVPVSWVPSLTVFSVPSRTSTXLTQSIYIPKGINVPSLAR 451
S C PV+ ++ VFS P T + +P + VPSL R
Sbjct: 283 SQCHGMAPPVTIRTAVPVFSAPPMPPPPCTNNTQLPSSVYVPSLMR 328
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 365 PSKMEPKIPGPSSTDKG-FPVRSTGSPTVTPEVSSY 261
P + P P PSS FPV + SPT+ P SSY
Sbjct: 204 PLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPS-SSY 238
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 365 PSKMEPKIPGPSSTDKG-FPVRSTGSPTVTPEVSSY 261
P + P P PSS FPV + SPT+ P SSY
Sbjct: 204 PLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPS-SSY 238
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 381
QV+E TSG+ ++ TG+ L + +LG IF+G +P+
Sbjct: 70 QVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPI 112
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 381
QV+E TSG+ ++ TG+ L + +LG IF+G +P+
Sbjct: 70 QVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPI 112
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 381
QV+E TSG+ ++ TG+ L + +LG IF+G +P+
Sbjct: 69 QVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPI 111
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 381
QV+E TSG+ ++ TG+ L + +LG IF+G +P+
Sbjct: 69 QVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPI 111
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 381
QV+E TSG+ ++ TG+ L + +LG IF+G +P+
Sbjct: 69 QVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPI 111
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -3
Query: 365 PSKMEPKIPGPSSTDKGFPVRSTGSPTV-TPEVSS 264
P PK+P PS P S SP+V TP V S
Sbjct: 42 PKVPSPKVPTPSVPSPYVPTPSVPSPSVPTPSVPS 76
>At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 386 TSTXLTQSIYIPKGINVPSLAREVDWEFNPLXVKVGSHI 502
T + +S+ P+G N+PS R++D + N +GS +
Sbjct: 157 TDAVIGRSVDPPRGRNIPSSRRKIDVDNNNYNHTLGSSV 195
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,060
Number of Sequences: 28952
Number of extensions: 292158
Number of successful extensions: 791
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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