Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0964
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    27   1.8  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    27   3.1  
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    26   4.1  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   4.1  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   5.4  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   7.1  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   9.4  

>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 325 PILRCKVAAFQFGWSSRYSCMSFQL 251
           P+LR K+AA   GW S  +C SF++
Sbjct: 60  PLLRTKLAAIHEGWES--ACHSFEI 82



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = -1

Query: 633 SSSLFRSSKQV*KPSPRASFAVTVSNSERYGGSSALADNDEIPCGSRSLRETWSRGP 463
           +S ++  S  V   + ++ FA+  +N+E+Y  S+ L   D       +L + +  GP
Sbjct: 258 NSGIYVESSIVLVRANQSDFALATANAEKYNASAILIFEDTYLTSLDNLNQVYPAGP 314


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 540 GSSALADNDEIPCGSRSLRETWSRGPVSVET 448
           GSS+L +  E  C    L E W   P ++++
Sbjct: 471 GSSSLKEQIEAGCSGLKLHEDWGSTPAAIDS 501


>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 286 SRTGMPPPYILVWARCGTRCYFLPTKDPQAV 378
           S TG+P P+I+  +R   R YF  T+  +++
Sbjct: 2   SNTGLPKPWIVKISRSRNRPYFFNTETHESL 32


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 504 CGSRSLRETW-SRGPVSVET*GGVQCAGSQLY 412
           C    L+  W S  P   ET GG+ C G +LY
Sbjct: 213 CSPGMLKTQWPSTQPSDGETRGGLLCKGGKLY 244


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 27   SFINRSCWRPINAQNKTGKFPEKQ*NMSDFTGRSVFRNR*SDREAMEDLLHVEHEV 194
            S++ R C   INA+ +TG +      MS  T    +RN   DR A E  L +E  +
Sbjct: 971  SWLYRGCVITINAEYETGDYQMILRRMSGTTIYRFWRNM-RDRGAFEKSLMMEQSM 1025


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 376 LPAGPWSAKSSISCRTLPILRC 311
           L  G W   ++ISC   P+L C
Sbjct: 128 LSKGSWEVTNTISCEKTPLLFC 149


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = -2

Query: 542 VVRQLWLIMTRSHVAVG---HYEKLGAVDQFQLKLEEG---YSVPVHSYTSITCH 396
           V R +  ++ R  VA G   +Y  +G++D F  KLE+      +P   +  +  H
Sbjct: 180 VNRNMVRVILRGGVASGSGQYYFSIGSIDSFDRKLEDAQRQLGIPPSEFVPVAYH 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,229
Number of Sequences: 5004
Number of extensions: 65815
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)