Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0964
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018) 32 0.35
SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92) 30 1.4
SB_47878| Best HMM Match : PARP_regulatory (HMM E-Value=0.65) 29 3.3
SB_12634| Best HMM Match : Phage_fiber (HMM E-Value=8.7) 29 4.3
SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36) 28 7.5
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 28 7.5
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 28 7.5
SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43) 27 9.9
SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22) 27 9.9
>SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018)
Length = 241
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 162 WLPYHFIDFEIRIFL*SLTYSIVFLETFRFYFGH*LAANN 43
WLP H + F I L S S +FL F F+ GH +A N
Sbjct: 97 WLPLHVLHFLIYFDLMSFLCSPLFLRLFGFWLGHANSALN 136
>SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 396
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 162 WLPYHFIDFEIRIFL*SLTYSIVFLETFRFYFGH*LAANN 43
WLP H + F I L S S +FL F F+ GH +A N
Sbjct: 252 WLPLHVLHFLIYFDLMSFLCSPLFLRLFGFWLGHANSALN 291
>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
Length = 806
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 422 EPAHCTPPQVSTETGPRLQVSRNDRLPHGISSL 520
EPAH P ++TET P +Q P + SL
Sbjct: 393 EPAHLNPLPMTTETPPEIQAEMTKDTPQHVRSL 425
>SB_47878| Best HMM Match : PARP_regulatory (HMM E-Value=0.65)
Length = 223
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +2
Query: 434 CTPPQVSTETGPRLQVSRNDRLPHGISSLSARA--DEPPYRSELDTVT 571
C + GP V R+ IS A A DEPPY ELD +T
Sbjct: 103 CPEDILRLHRGPTFSVLEQLRVTFDISREMALATSDEPPYYGELDIIT 150
>SB_12634| Best HMM Match : Phage_fiber (HMM E-Value=8.7)
Length = 59
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -1
Query: 309 RWR---HSSSAGHQDTRA-CRSNSLNDFRRRIFKRHVHTL 202
+WR H+ + H DT C +LND KRH HT+
Sbjct: 3 KWRKPGHTHTVAHNDTHTTCTHCTLNDTHSVGTKRHAHTV 42
>SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)
Length = 704
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 476 QVSRNDRLPHGISSLSARADEPPYRSEL 559
++SRND + IS+ S RA+ PP + +L
Sbjct: 572 RMSRNDSIGSSISNSSNRANNPPQKRKL 599
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 303 RHSSSAGHQDTRACRSNSLNDFRRRIFKRHVHT 205
RH S HQ ++ S+S ++ R R +RH H+
Sbjct: 37 RHKHSRKHQHSKQSDSDSEDEHRHRSSRRHRHS 69
>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 441 GVQCAGSQLYFHHVPH*VLQRNCLRVLGRQ--KVASRAAPCPY 319
G Q +Q+Y HHV +L+RN LG+Q K+A+ PY
Sbjct: 371 GAQGMKTQVYLHHVLRQLLRRN----LGQQALKIANTCTDLPY 409
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +3
Query: 489 MTDCHMGSRHYQPELTNHRIVQNWTRSPQNSPSATASILV 608
+ D H+G +HY PE + +W+++ + +A + V
Sbjct: 5725 IVDLHVGEKHYGPEFAEEEL--DWSKTARKGENARITFTV 5762
>SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1391
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 510 SRHYQPELTNHRIVQNWTRSPQNSPS 587
SRHY P+LT+ I N + S +N PS
Sbjct: 697 SRHYNPDLTSQEIQGN-SSSSENLPS 721
>SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43)
Length = 1280
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 253 VGTTCTSILMTSRTGMPPPYILVWARCG 336
V T T++LM S TG P P + W R G
Sbjct: 291 VNKTNTAVLMCSATGNPTPNV-TWTRSG 317
>SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22)
Length = 965
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 253 VGTTCTSILMTSRTGMPPPYILVWARCG 336
V T T++LM S TG P P + W R G
Sbjct: 723 VNKTNTAVLMCSATGNPTPNV-TWTRSG 749
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,272,950
Number of Sequences: 59808
Number of extensions: 515137
Number of successful extensions: 1212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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