Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0964
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 29 2.8
U28944-12|AAA68371.2| 363|Caenorhabditis elegans Hypothetical p... 29 3.8
U41556-9|AAK39192.1| 692|Caenorhabditis elegans Potassium chann... 28 6.6
U41556-8|AAM51518.1| 740|Caenorhabditis elegans Potassium chann... 28 6.6
AY572974-1|AAT77227.1| 692|Caenorhabditis elegans KQT-1 potassi... 28 6.6
AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like nucl... 28 6.6
AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical ... 28 6.6
AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical ... 28 6.6
Z69384-8|CAM06585.1| 495|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z69384-7|CAA93417.2| 502|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF016439-2|AAB65897.1| 176|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
C46C2.1b protein.
Length = 1677
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 516 HYQPELTNHRIVQNWTRSPQNSPSATA 596
H+QP +H +QN PQN SATA
Sbjct: 1616 HHQPHPPHHPHLQNHYHPPQNHTSATA 1642
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
C46C2.1a protein.
Length = 1838
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 516 HYQPELTNHRIVQNWTRSPQNSPSATA 596
H+QP +H +QN PQN SATA
Sbjct: 1777 HHQPHPPHHPHLQNHYHPPQNHTSATA 1803
>U28944-12|AAA68371.2| 363|Caenorhabditis elegans Hypothetical
protein C18A3.2 protein.
Length = 363
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 220 TSCPYTFFRTSCSTCNRSSMASL 152
TS PYTF RT C +++S++ L
Sbjct: 22 TSIPYTFLRTCCVNASKTSISFL 44
>U41556-9|AAK39192.1| 692|Caenorhabditis elegans Potassium channel,
kvqlt familyprotein 1, isoform a protein.
Length = 692
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 258 NDMHEYLDDQPNWNAATLHLSM 323
N MH +L+ W AAT HL++
Sbjct: 87 NKMHNFLERPRGWKAATYHLAV 108
>U41556-8|AAM51518.1| 740|Caenorhabditis elegans Potassium channel,
kvqlt familyprotein 1, isoform b protein.
Length = 740
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 258 NDMHEYLDDQPNWNAATLHLSM 323
N MH +L+ W AAT HL++
Sbjct: 135 NKMHNFLERPRGWKAATYHLAV 156
>AY572974-1|AAT77227.1| 692|Caenorhabditis elegans KQT-1 potassium
channel protein.
Length = 692
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 258 NDMHEYLDDQPNWNAATLHLSM 323
N MH +L+ W AAT HL++
Sbjct: 87 NKMHNFLERPRGWKAATYHLAV 108
>AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 575
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 170 ILHGFPITSSISKYGSSCKV*HILLFFW 87
+ HGF + + I Y + + ++ LFFW
Sbjct: 58 VYHGFLVAAGIHNYQKAAPLIYVTLFFW 85
>AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical
protein F27E11.2b protein.
Length = 454
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 170 ILHGFPITSSISKYGSSCKV*HILLFFW 87
+ HGF + + I Y + + ++ LFFW
Sbjct: 58 VYHGFLVAAGIHNYQKAAPLIYVTLFFW 85
>AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical
protein F27E11.2a protein.
Length = 555
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 170 ILHGFPITSSISKYGSSCKV*HILLFFW 87
+ HGF + + I Y + + ++ LFFW
Sbjct: 58 VYHGFLVAAGIHNYQKAAPLIYVTLFFW 85
>Z69384-8|CAM06585.1| 495|Caenorhabditis elegans Hypothetical
protein T11G6.2b protein.
Length = 495
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 95 FFWKLSGFILGIDWPPTTSI 36
F W L+GFI + WP SI
Sbjct: 144 FLWILNGFIQSVGWPVEVSI 163
>Z69384-7|CAA93417.2| 502|Caenorhabditis elegans Hypothetical
protein T11G6.2a protein.
Length = 502
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 95 FFWKLSGFILGIDWPPTTSI 36
F W L+GFI + WP SI
Sbjct: 151 FLWILNGFIQSVGWPVEVSI 170
>AF016439-2|AAB65897.1| 176|Caenorhabditis elegans Hypothetical
protein R02F11.1 protein.
Length = 176
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = -1
Query: 639 ETSSSLFRSSKQV*KPSPRASFAVTVSNSERYGGSSALADNDEIPCGSRSLRETWSRGPV 460
E +S++FR +Q PS S + S +RY +S P G+ +L S GP
Sbjct: 33 EANSTVFRQKRQFGCPSNCYSSCSSSSQCQRYSVASVCVQGCCCP-GNNNLDTACSGGPA 91
Query: 459 SVET*GGV 436
GG+
Sbjct: 92 VAACLGGL 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,432,595
Number of Sequences: 27780
Number of extensions: 380905
Number of successful extensions: 1003
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -