Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0962
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74033-4|CAA98471.2|  822|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AB095019-1|BAC22611.1|  822|Caenorhabditis elegans ubiquitin-spe...    29   3.8  
Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z74033-4|CAA98471.2|  822|Caenorhabditis elegans Hypothetical
           protein F38B7.5 protein.
          Length = 822

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 74  NSPYTNTNDTHIDDINLYINEISGELAGGAS*NSAQCCCLARKPSKLNKLTQNLIT 241
           NS  +   +   DD +   + +SG L GGA    +QC  +     K  +L  N+ +
Sbjct: 498 NSEDSRLAEITTDDAHFNDSRVSGRLLGGADEEMSQCSVIVEDVKKRKELYFNIFS 553


>AB095019-1|BAC22611.1|  822|Caenorhabditis elegans
           ubiquitin-specific protease protein.
          Length = 822

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 74  NSPYTNTNDTHIDDINLYINEISGELAGGAS*NSAQCCCLARKPSKLNKLTQNLIT 241
           NS  +   +   DD +   + +SG L GGA    +QC  +     K  +L  N+ +
Sbjct: 498 NSEDSRLAEITTDDAHFNDSRVSGRLLGGADEEMSQCSVIVEDVKKRKELYFNIFS 553


>Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical
           protein T22G5.3 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
 Frame = +3

Query: 447 LLQLRVSFD---NFYQLFKAY*NTFYFNIYIKRAIIDAIWT---NSYYNV-LNSEPLCVC 605
           LL L +S D   N  ++FK   N  + NIY    +ID  +T   N Y+ +  +S+PL   
Sbjct: 26  LLNLALSSDKSRNHVKMFKKPINFIWLNIYEDYCLIDVQFTKKRNIYWKIHKSSKPLKGS 85

Query: 606 EKHSHSFV 629
           ++   SFV
Sbjct: 86  KRKIDSFV 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,774,567
Number of Sequences: 27780
Number of extensions: 224863
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)