Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0961
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CBP3 Cluster: Chromosome undetermined scaffold_165, w...    35   1.5  
UniRef50_Q9KAR3 Cluster: Maltose transport system; n=4; Bacillus...    35   2.0  
UniRef50_Q5UQ50 Cluster: Collagen-like protein 6; n=2; root|Rep:...    34   3.4  
UniRef50_UPI0000D55A73 Cluster: PREDICTED: similar to UPF2 regul...    33   4.5  
UniRef50_Q04956 Cluster: Probable cation-transporting ATPase 1; ...    33   7.9  

>UniRef50_A0CBP3 Cluster: Chromosome undetermined scaffold_165, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_165, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1771

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = -2

Query: 389  ETFKMSQRKRKQINIEEKSRIMQIYFSNNSLPICLYLHDTH 267
            +TF+M QRK   + I++   +  IY   N  PI LYLHD H
Sbjct: 942  QTFEMFQRKF--LFIDQNHFMKIIYIKQNQSPIILYLHDQH 980


>UniRef50_Q9KAR3 Cluster: Maltose transport system; n=4;
           Bacillus|Rep: Maltose transport system - Bacillus
           halodurans
          Length = 276

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 124 PIKCSEIYKLNIFIWETFVYTIFFVQSKSVITASKGLLIFSRKN 255
           P+  S +    +FIW  + + IFF+QSK V T +  L  F  +N
Sbjct: 193 PVTASVLIISCVFIWNDYQFAIFFLQSKDVHTLTVALASFFGEN 236


>UniRef50_Q5UQ50 Cluster: Collagen-like protein 6; n=2; root|Rep:
           Collagen-like protein 6 - Mimivirus
          Length = 1387

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 132 VFRDLQTQYFYMGNICIY-NFFCTVKICYNGIEG 230
           ++ D  TQY+Y  N CI+  +FC    C+ G +G
Sbjct: 52  IYLDRTTQYYYKKNNCIWIKYFCNGYCCFKGCKG 85


>UniRef50_UPI0000D55A73 Cluster: PREDICTED: similar to UPF2
           regulator of nonsense transcripts homolog; n=1;
           Tribolium castaneum|Rep: PREDICTED: similar to UPF2
           regulator of nonsense transcripts homolog - Tribolium
           castaneum
          Length = 1131

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -2

Query: 410 KLCGVIRETFKMSQRKRKQINIEEKSRIMQ 321
           +LC ++R+ FK   RK+ QINIE K ++++
Sbjct: 519 ELCQMLRQDFKYHVRKKDQINIESKIKVVR 548


>UniRef50_Q04956 Cluster: Probable cation-transporting ATPase 1; n=3;
            Plasmodium|Rep: Probable cation-transporting ATPase 1 -
            Plasmodium falciparum
          Length = 1956

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 264  NITVFTTEYEQSLRCRYNRF*LYKKNCIYKCFPYKNIEFVNLGTLY 127
            N+    TEY    +C YN   LY+ N +YK    K+  + N+ TLY
Sbjct: 1183 NLDYCPTEYH---KCTYNNSILYRNNFLYKKENKKDKNYKNISTLY 1225


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,493,737
Number of Sequences: 1657284
Number of extensions: 11648208
Number of successful extensions: 24554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24549
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)