Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0961
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    28   1.0  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   1.8  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   3.1  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   5.4  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    25   7.1  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    25   9.4  

>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 36  NDCQFYAEWRPLNSVLSFVPAVLNHRVVNPYKVF 137
           NDC F+ EW+ +++     P V     +NP  VF
Sbjct: 181 NDCAFFFEWKTIHA----CPTVKKDSTLNPVSVF 210


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 518 RVFLILRNKTRACGSQSPLLHISAVSLLLIYTQDAPKLCGVIRETFK 378
           R+   L N  +     S L+  S+ S+ L++     K+CGV R+T +
Sbjct: 609 RLSFFLENTNQTAPDDSVLVRCSSKSIGLLFFFPLVKVCGVPRDTLQ 655


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 201 LYKKNCIYKCFPYKNIEFVNLGTLYRGL 118
           LYK+    KCF YKN     L ++Y+GL
Sbjct: 894 LYKEMREQKCFSYKNFISCVLISVYQGL 921


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 330 YYANIFFQ*FPTDLFVLARYTLNITVFTTEYEQS 229
           YY+NI    F  + F    Y  +I +F T Y +S
Sbjct: 181 YYSNIVVDPFSPNYFAANSYDGDIAIFDTRYFKS 214


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 331 VLCKYIFPIIPY-RFVCTCTIHIKHHRFYD 245
           V  +Y F    Y  ++C CT+++ HH F D
Sbjct: 269 VFPRYRFCFYGYVLWLCWCTMYLTHHYFVD 298


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -2

Query: 437 LLIYTQDAPK---LCGVIRET-FKMSQRKRKQINIEEKSRIMQIYF 312
           LL+YT +A +   +C  +  + FK     R+ ++ +EKS +  +Y+
Sbjct: 175 LLVYTSEAGENIEICFFLTNSLFKRLLNNREALSKDEKSELQNLYY 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,661
Number of Sequences: 5004
Number of extensions: 56005
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)